myRT

myRT report for GCA_001994135.1_ASM199413v1

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Seq: MUWD01000045.1 Burkholderia cenocepacia strain VC5305 VC5305_contig-2000004, whole genome shotgun sequence (48103 bp)
Overview 1 RT 1: 41437-48102 bp Neighborhood of RT #1 [41437, 48103] HATPase_c_3 RVT-UG5 IS285 Feature: gene Location: 41437-42126 bp Feature: gene Location: 42378-44393 bp Ori: OOA23799.1 Feature: domain Description: HATPase_c_3 Location: 42447-42771 bp Feature: domain Description: HATPase_c_3 Location: 42447-42771 bp Feature: gene Location: 44459-47452 bp Ori: OOA23803.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44930-45404 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44930-45404 bp Feature: gene Location: 47637-48103 bp Ori: OOA23800.1 Feature: domain Description: IS285 Location: 47691-48102 bp Feature: domain Description: IS285 Location: 47691 -481 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328)

Seq: MUWD01000121.1 Burkholderia cenocepacia strain VC5305 VC5305_contig-7000011, whole genome shotgun sequence (43390 bp)
Overview 1 RT 1: 10718-16143 bp Neighborhood of RT #1 [10718, 16163] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 10718-11410 bp Ori: OOA14454.1 Feature: domain Description: DLH Location: 10730-11408 bp Feature: domain Description: DLH Location: 10730-11408 bp Feature: gene Location: 11491-12969 bp Ori: OOA14486.1 Feature: domain Description: GatA Location: 11518-12946 bp Feature: domain Description: GatA Location: 11518-12 946 bp Feature: gene Location: 13079-14476 bp Ori: OOA14455.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13412-14030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13412 -14030 bp Feature: domain Description: GIIM Note: maturase Location: 14081-14291 bp Feature: domain Description: GIIM Note: maturase Location: 14081-142 91 bp Feature: gene Location: 14949-15779 bp Ori: OOA14456.1 Feature: domain Description: fadh2 Location: 14967-15771 bp Feature: domain Description: fadh2 Location: 14967-15771 bp Feature: gene Location: 15810-16163 bp Ori: OOA14457.1 Feature: domain Description: YvlD Location: 15813-16143 bp Feature: domain Description: YvlD Location: 15813-16143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWD01000056.1 Burkholderia cenocepacia strain VC5305 VC5305_contig-5000005, whole genome shotgun sequence (119382 bp)
Overview 1 RT 1: 109546-117923 bp Neighborhood of RT #1 [109546, 118144] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 109546-110652 bp Ori: OOA22272.1 Feature: domain Description: PRK05643 Location: 109558-110650 bp Feature: domain Description: PRK05643 Location: 109558-110650 bp Feature: gene Location: 110845-113319 bp Ori: OOA22273.1 Feature: domain Description: gyrB Location: 110875-113317 bp Feature: domain Description: gyrB Location: 110875-113 3 17 bp Feature: gene Location: 113745-115496 bp Ori: OOA22274.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113880-114522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113 880-114522 bp Feature: gene Location: 115591-117312 bp Ori: OOA22275.1 Feature: domain Description: YjgR Location: 116074-116338 bp Feature: domain Description: YjgR Location: 116074-1163 3 8 bp Feature: domain Description: YjgR Location: 116833-117235 bp Feature: domain Description: YjgR Location: 11683 3 -11723 5 bp Feature: gene Location: 117305-118144 bp Ori: OOA22276.1 Feature: domain Description: SIR2_2 Location: 117479-117923 bp Feature: domain Description: SIR2_2 Location: 117479-117923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWD01000034.1 Burkholderia cenocepacia strain VC5305 VC5305_contig-2000003, whole genome shotgun sequence (253679 bp)
Overview 1 RT 1: 145897-149712 bp Neighborhood of RT #1 [145897, 149717] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 145897-146226 bp Ori: OOA25368.1 Feature: domain Description: Histone_HNS Location: 145918-146155 bp Feature: domain Description: Histone_HNS Location: 14 5918-14 6155 bp Feature: gene Location: 146373-146579 bp Feature: gene Location: 146552-147901 bp Ori: OOA25370.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147017-147653 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 7017-14 7653 bp Feature: gene Location: 148155-148727 bp Ori: OOA25371.1 Feature: domain Description: FIN Location: 148341-148692 bp Feature: domain Description: FIN Location: 14 834 1-14 8692 bp Feature: gene Location: 148962-149717 bp Ori: OOA25372.1 Feature: domain Description: his_ut_repres Location: 149040-149712 bp Feature: domain Description: his_ut_repres Location: 14 904 0-14 9712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWD01000123.1 Burkholderia cenocepacia strain VC5305 VC5305_contig-9000011, whole genome shotgun sequence (51758 bp)
Overview 1 RT 1: 45527-51758 bp Neighborhood of RT #1 [45527, 51758] AcpA MauG RVT-GII GIIM Feature: gene Location: 45527-47200 bp Ori: OOA14331.1 Feature: domain Description: AcpA Location: 45656-47060 bp Feature: domain Description: AcpA Location: 45 65 6-47060 bp Feature: gene Location: 47296-48714 bp Ori: OOA14332.1 Feature: domain Description: MauG Location: 47464-48661 bp Feature: domain Description: MauG Location: 47464-48661 bp Feature: gene Location: 48800-50167 bp Ori: OOA14333.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49133-49748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49133-49748 bp Feature: domain Description: GIIM Note: maturase Location: 49808-50009 bp Feature: domain Description: GIIM Note: maturase Location: 49808-5 0009 bp Feature: gene Location: 50238-50567 bp Feature: gene Location: 50697-51758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcpA (cd16013), MauG (COG1858), RVT-GII, GIIM (pfam08388)