myRT

myRT report for GCA_001994145.1_ASM199414v1

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Seq: MUWE01000038.1 Burkholderia cenocepacia strain VC5617 VC5617_contig-1000004, whole genome shotgun sequence (42383 bp)
Overview 1 RT 1: 32547-40924 bp Neighborhood of RT #1 [32547, 41145] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 32547-33653 bp Feature: domain Description: PRK05643 Location: 32559-33651 bp Feature: domain Description: PRK05643 Location: 32559-33651 bp Feature: gene Location: 33846-36320 bp Feature: domain Description: gyrB Location: 33876-36318 bp Feature: domain Description: gyrB Location: 33876-3631 8 bp Feature: gene Location: 36746-38497 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36881-37523 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36881 -37523 bp Feature: gene Location: 38592-40313 bp Feature: domain Description: YjgR Location: 39075-39339 bp Feature: domain Description: YjgR Location: 39075-39339 bp Feature: domain Description: YjgR Location: 39834-40236 bp Feature: domain Description: YjgR Location: 39834-40236 bp Feature: gene Location: 40306-41145 bp Feature: domain Description: SIR2_2 Location: 40480-40924 bp Feature: domain Description: SIR2_2 Location: 40480-40924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWE01000037.1 Burkholderia cenocepacia strain VC5617 VC5617_contig-4, whole genome shotgun sequence (208639 bp)
Overview 1 RT 1: 125348-129163 bp Neighborhood of RT #1 [125348, 129168] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125348-125677 bp Feature: domain Description: Histone_HNS Location: 125369-125606 bp Feature: domain Description: Histone_HNS Location: 12 5369-12 5606 bp Feature: gene Location: 125824-126030 bp Feature: gene Location: 126003-127352 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126468-127104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 6468-12 7104 bp Feature: gene Location: 127606-128178 bp Feature: domain Description: FIN Location: 127792-128143 bp Feature: domain Description: FIN Location: 12 7792 -12 8143 bp Feature: gene Location: 128413-129168 bp Feature: domain Description: his_ut_repres Location: 128491-129163 bp Feature: domain Description: his_ut_repres Location: 12 8491-12 9163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWE01000112.1 Burkholderia cenocepacia strain VC5617 VC5617_contig-5000010, whole genome shotgun sequence (43534 bp)
Overview 1 RT 1: 27372-32815 bp Neighborhood of RT #1 [27372, 32817] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 27372-27725 bp Feature: domain Description: YvlD Location: 27375-27705 bp Feature: domain Description: YvlD Location: 273 75-27705 bp Feature: gene Location: 27756-28586 bp Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: gene Location: 29059-30456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29392-30010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 92-3 0010 bp Feature: domain Description: GIIM Note: maturase Location: 30061-30271 bp Feature: domain Description: GIIM Note: maturase Location: 3 0061-3 0271 bp Feature: gene Location: 30566-32044 bp Feature: domain Description: GatA Location: 30593-32021 bp Feature: domain Description: GatA Location: 3 0593 -3 2021 bp Feature: gene Location: 32125-32817 bp Feature: domain Description: DLH Location: 32137-32815 bp Feature: domain Description: DLH Location: 3 213 7-3 2815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)

Seq: MUWE01000126.1 Burkholderia cenocepacia strain VC5617 VC5617_contig-8000011, whole genome shotgun sequence (1715 bp)
Overview 1 RT 1: 1-1709 bp Neighborhood of RT #1 [1, 1709] RVT-GII GIIM Feature: gene Location: 1-1309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334 -94 9 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: gene Location: 1380-1709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)