myRT

myRT report for GCA_001994165.1_ASM199416v1

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Seq: MUWF01000008.1 Burkholderia cenocepacia strain VC5618 VC5618_contig-7000000, whole genome shotgun sequence (58188 bp)
Overview 1 RT 1: 53395-58188 bp Neighborhood of RT #1 [53395, 58188] PRK14673 RsmI RVT-GII GIIM Feature: gene Location: 53395-53871 bp Feature: domain Description: PRK14673 Location: 53446-53863 bp Feature: domain Description: PRK1 4673 Location: 53446-53863 bp Feature: gene Location: 53870-54757 bp Feature: domain Description: RsmI Location: 53918-54731 bp Feature: domain Description: RsmI Location: 5391 8-54731 bp Feature: gene Location: 54865-56232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55198-55813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 98-5581 3 bp Feature: domain Description: GIIM Note: maturase Location: 55873-56074 bp Feature: domain Description: GIIM Note: maturase Location: 55873-56074 bp Feature: gene Location: 56303-56632 bp Feature: gene Location: 56762-58188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RVT-GII, GIIM (pfam08388)

Seq: MUWF01000059.1 Burkholderia cenocepacia strain VC5618 VC5618_contig-11000005, whole genome shotgun sequence (229663 bp)
Overview 1 RT 1: 146372-150187 bp Neighborhood of RT #1 [146372, 150192] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 146372-146701 bp Feature: domain Description: Histone_HNS Location: 146393-146630 bp Feature: domain Description: Histone_HNS Location: 146393-146630 bp Feature: gene Location: 146848-147054 bp Feature: gene Location: 147027-148376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147492-148128 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147492 -14812 8 bp Feature: gene Location: 148630-149202 bp Feature: domain Description: FIN Location: 148816-149167 bp Feature: domain Description: FIN Location: 148816-149167 bp Feature: gene Location: 149437-150192 bp Feature: domain Description: his_ut_repres Location: 149515-150187 bp Feature: domain Description: his_ut_repres Location: 149515-150187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWF01000112.1 Burkholderia cenocepacia strain VC5618 VC5618_contig-5000010, whole genome shotgun sequence (43390 bp)
Overview 1 RT 1: 27228-32671 bp Neighborhood of RT #1 [27228, 32673] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 27228-27581 bp Feature: domain Description: YvlD Location: 27231-27561 bp Feature: domain Description: YvlD Location: 2723 1-27561 bp Feature: gene Location: 27612-28442 bp Feature: domain Description: fadh2 Location: 27630-28434 bp Feature: domain Description: fadh2 Location: 2763 0-2843 4 bp Feature: gene Location: 28915-30312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29248-29866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29248-29866 bp Feature: domain Description: GIIM Note: maturase Location: 29917-30127 bp Feature: domain Description: GIIM Note: maturase Location: 29917-3 0127 bp Feature: gene Location: 30422-31900 bp Feature: domain Description: GatA Location: 30449-31877 bp Feature: domain Description: GatA Location: 3 0449-3 1877 bp Feature: gene Location: 31981-32673 bp Feature: domain Description: DLH Location: 31993-32671 bp Feature: domain Description: DLH Location: 3 1993 -3 2671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)

Seq: MUWF01000063.1 Burkholderia cenocepacia strain VC5618 VC5618_contig-3000006, whole genome shotgun sequence (42790 bp)
Overview 1 RT 1: 961-9557 bp Neighborhood of RT #1 [961, 9559] SIR2_2 YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 961-1800 bp Feature: domain Description: SIR2_2 Location: 1135-1579 bp Feature: domain Description: SIR2_2 Location: 1135-1579 bp Feature: gene Location: 1793-3514 bp Feature: domain Description: YjgR Location: 2276-2540 bp Feature: domain Description: YjgR Location: 2276-254 0 bp Feature: domain Description: YjgR Location: 3035-3437 bp Feature: domain Description: YjgR Location: 3035-34 37 bp Feature: gene Location: 3609-5360 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3744-4386 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 374 4 -4 386 bp Feature: gene Location: 5786-8260 bp Feature: domain Description: gyrB Location: 5816-8258 bp Feature: domain Description: gyrB Location: 5816-8258 bp Feature: gene Location: 8453-9559 bp Feature: domain Description: PRK05643 Location: 8465-9557 bp Feature: domain Description: PRK0564 3 Location: 84 65-9557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjgR (COG0433), RVT-Retrons, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated)