myRT

myRT report for GCA_001994195.1_ASM199419v1

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Seq: MUWH01000047.1 Burkholderia cenocepacia strain VC6901 VC6901_contig-2000004, whole genome shotgun sequence (39825 bp)
Overview 1 RT 1: 32101-39821 bp Neighborhood of RT #1 [32101, 39825] PRK05643 gyrB RVT-Retrons YjgR YjgR PRK09413 Feature: gene Location: 32101-33207 bp Ori: OOA63341.1 Feature: domain Description: PRK05643 Location: 32113-33205 bp Feature: domain Description: PRK05643 Location: 321 1 3-33205 bp Feature: gene Location: 33400-35874 bp Ori: OOA63342.1 Feature: domain Description: gyrB Location: 33430-35872 bp Feature: domain Description: gyrB Location: 33430-35872 bp Feature: gene Location: 36300-38051 bp Ori: OOA63343.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36435-37077 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36435-37077 bp Feature: gene Location: 38146-39459 bp Ori: OOA63344.1 Feature: domain Description: YjgR Location: 38242-38485 bp Feature: domain Description: YjgR Location: 38242-38485 bp Feature: domain Description: YjgR Location: 38977-39382 bp Feature: domain Description: YjgR Location: 38977-39382 bp Feature: gene Location: 39656-39825 bp Ori: OOA63346.1 Feature: domain Description: PRK09413 Location: 39710-39821 bp Feature: domain Description: PRK0941 3 Location: 3971 0-39821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: MUWH01000109.1 Burkholderia cenocepacia strain VC6901 VC6901_contig-4000010, whole genome shotgun sequence (16935 bp)
Overview 1 RT 1: 1-6667 bp Neighborhood of RT #1 [1, 6667] IS285 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-467 bp Ori: OOA55347.1 Feature: domain Description: IS285 Location: 55-466 bp Feature: domain Description: IS2 85 Location: 55-466 bp Feature: gene Location: 652-3645 bp Ori: OOA55358.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-1597 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 112 3-1597 bp Feature: gene Location: 3711-5726 bp Ori: OOA55348.1 Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: gene Location: 5978-6667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUWH01000130.1 Burkholderia cenocepacia strain VC6901 VC6901_contig-14000011, whole genome shotgun sequence (30476 bp)
Overview 1 RT 1: 21276-30443 bp Neighborhood of RT #1 [21276, 30443] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 21276-22694 bp Ori: OOA53235.1 Feature: domain Description: MFS_SV2_like Location: 21396-22647 bp Feature: domain Description: MFS_SV2_like Location: 213 96-22647 bp Feature: gene Location: 23142-25604 bp Ori: OOA53236.1 Feature: domain Description: MscK Location: 23220-25563 bp Feature: domain Description: MscK Location: 23 220-25563 bp Feature: gene Location: 25748-27115 bp Ori: OOA53237.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26081-26696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26081-26696 bp Feature: domain Description: GIIM Note: maturase Location: 26756-26957 bp Feature: domain Description: GIIM Note: maturase Location: 26756-26957 bp Feature: gene Location: 27186-27515 bp Feature: gene Location: 27645-30443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUWH01000163.1 Burkholderia cenocepacia strain VC6901 VC6901_contig-12000014, whole genome shotgun sequence (314331 bp)
Overview 1 RT 1: 146479-150294 bp Neighborhood of RT #1 [146479, 150299] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 146479-146808 bp Ori: OOA48214.1 Feature: domain Description: Histone_HNS Location: 146500-146737 bp Feature: domain Description: Histone_HNS Location: 14 6500-14 6737 bp Feature: gene Location: 146955-147161 bp Feature: gene Location: 147134-148483 bp Ori: OOA48216.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147599-148235 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 7599-14 8235 bp Feature: gene Location: 148737-149309 bp Ori: OOA48217.1 Feature: domain Description: FIN Location: 148923-149274 bp Feature: domain Description: FIN Location: 14 8923-14 9274 bp Feature: gene Location: 149544-150299 bp Ori: OOA48218.1 Feature: domain Description: his_ut_repres Location: 149622-150294 bp Feature: domain Description: his_ut_repres Location: 14 9622-150294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWH01000170.1 Burkholderia cenocepacia strain VC6901 VC6901_contig-6000015, whole genome shotgun sequence (71676 bp)
Overview 1 RT 1: 21276-28149 bp 2 RT 2: 37894-43319 bp Neighborhood of RT #1 [21276, 28184] MFS_SV2_like MscK RVT-GII GIIM RlpA Neighborhood of RT #2 [37894, 43339] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 21276-22694 bp Ori: OOA46775.1 Feature: domain Description: MFS_SV2_like Location: 21396-22647 bp Feature: domain Description: MFS_SV2_like Location: 21396-22647 bp Feature: gene Location: 23142-25604 bp Ori: OOA46776.1 Feature: domain Description: MscK Location: 23220-25563 bp Feature: domain Description: MscK Location: 23220-25 5 63 bp Feature: gene Location: 25748-27115 bp Ori: OOA46777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26081-26696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26081-26696 bp Feature: domain Description: GIIM Note: maturase Location: 26756-26957 bp Feature: domain Description: GIIM Note: maturase Location: 2675 6-2695 7 bp Feature: gene Location: 27186-27515 bp Feature: gene Location: 27573-28184 bp Ori: OOA46779.1 Feature: domain Description: RlpA Location: 27645-28149 bp Feature: domain Description: RlpA Location: 27645 -28149 bp Feature: gene Location: 37894-38586 bp Ori: OOA46787.1 Feature: domain Description: DLH Location: 37906-38584 bp Feature: domain Description: DLH Location: 37906-385 84 bp Feature: gene Location: 38667-40145 bp Ori: OOA46820.1 Feature: domain Description: GatA Location: 38694-40122 bp Feature: domain Description: GatA Location: 38694-40122 bp Feature: gene Location: 40255-41652 bp Ori: OOA46788.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40588-41206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405 88-41206 bp Feature: domain Description: GIIM Note: maturase Location: 41257-41467 bp Feature: domain Description: GIIM Note: maturase Location: 4125 7-41467 bp Feature: gene Location: 42125-42955 bp Ori: OOA46789.1 Feature: domain Description: fadh2 Location: 42143-42947 bp Feature: domain Description: fadh2 Location: 42143-42947 bp Feature: gene Location: 42986-43339 bp Ori: OOA46790.1 Feature: domain Description: YvlD Location: 42989-43319 bp Feature: domain Description: YvlD Location: 42989-43319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388), RlpA (COG0797), DLH (pfam01738), GatA (COG0154), fadh2 (TIGR00676), YvlD (COG1950)