myRT

myRT report for GCA_001994205.1_ASM199420v1

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Seq: MUWG01000035.1 Burkholderia cenocepacia strain VC6047 VC6047_contig-6000002, whole genome shotgun sequence (52486 bp)
Overview 1 RT 1: 1239-9835 bp Neighborhood of RT #1 [1239, 9837] SIR2_2 YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 1239-2078 bp Ori: OOA91085.1 Feature: domain Description: SIR2_2 Location: 1413-1857 bp Feature: domain Description: SIR2_2 Location: 1 41 3-1 857 bp Feature: gene Location: 2071-3792 bp Ori: OOA91086.1 Feature: domain Description: YjgR Location: 2554-2818 bp Feature: domain Description: YjgR Location: 2554-281 8 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: domain Description: YjgR Location: 331 3-371 5 bp Feature: gene Location: 3887-5638 bp Ori: OOA91087.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4022-4664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4022-4664 bp Feature: gene Location: 6064-8538 bp Ori: OOA91088.1 Feature: domain Description: gyrB Location: 6094-8536 bp Feature: domain Description: gyrB Location: 6094-8536 bp Feature: gene Location: 8731-9837 bp Ori: OOA91089.1 Feature: domain Description: PRK05643 Location: 8743-9835 bp Feature: domain Description: PRK05643 Location: 8743-9835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-Retrons, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated)

Seq: MUWG01000214.1 Burkholderia cenocepacia strain VC6047 VC6047_contig-14, whole genome shotgun sequence (241127 bp)
Overview 1 RT 1: 125824-129573 bp Neighborhood of RT #1 [125824, 129644] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 125824-126579 bp Ori: OOA71631.1 Feature: domain Description: his_ut_repres Location: 125902-126574 bp Feature: domain Description: his_ut_repres Location: 12 5902 -12 6574 bp Feature: gene Location: 126814-127386 bp Ori: OOA71632.1 Feature: domain Description: FIN Location: 127000-127351 bp Feature: domain Description: FIN Location: 12 7000-12 7351 bp Feature: gene Location: 127640-128989 bp Ori: OOA71633.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128105-128741 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 8105-12 8741 bp Feature: gene Location: 128962-129168 bp Feature: gene Location: 129315-129644 bp Ori: OOA71635.1 Feature: domain Description: Histone_HNS Location: 129336-129573 bp Feature: domain Description: Histone_HNS Location: 12 9336-12 9573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUWG01000022.1 Burkholderia cenocepacia strain VC6047 VC6047_contig-8000001, whole genome shotgun sequence (29148 bp)
Overview 1 RT 1: 21340-29148 bp Neighborhood of RT #1 [21340, 29148] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 21340-22758 bp Ori: OOA92698.1 Feature: domain Description: MFS_SV2_like Location: 21460-22711 bp Feature: domain Description: MFS_SV2_like Location: 21460-22711 bp Feature: gene Location: 23206-25668 bp Ori: OOA92699.1 Feature: domain Description: MscK Location: 23284-25627 bp Feature: domain Description: MscK Location: 23 284-25627 bp Feature: gene Location: 25812-27179 bp Ori: OOA92700.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26145-26760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26145-26760 bp Feature: domain Description: GIIM Note: maturase Location: 26820-27021 bp Feature: domain Description: GIIM Note: maturase Location: 26820-27021 bp Feature: gene Location: 27250-27579 bp Feature: gene Location: 27709-29148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUWG01000218.1 Burkholderia cenocepacia strain VC6047 VC6047_contig-4000014, whole genome shotgun sequence (17102 bp)
Overview 1 RT 1: 10436-17101 bp Neighborhood of RT #1 [10436, 17102] HATPase_c_3 RVT-UG5 IS285 Feature: gene Location: 10436-11125 bp Feature: gene Location: 11377-13392 bp Ori: OOA70784.1 Feature: domain Description: HATPase_c_3 Location: 11446-11770 bp Feature: domain Description: HATPase_c_3 Location: 114 4 6-11770 bp Feature: gene Location: 13458-16451 bp Ori: OOA70786.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13929-14403 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13929-14 4 03 bp Feature: gene Location: 16636-17102 bp Ori: OOA70785.1 Feature: domain Description: IS285 Location: 16690-17101 bp Feature: domain Description: IS285 Location: 16690-17101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328)

Seq: MUWG01000132.1 Burkholderia cenocepacia strain VC6047 VC6047_contig-12000008, whole genome shotgun sequence (24910 bp)
Overview 1 RT 1: 8654-14097 bp Neighborhood of RT #1 [8654, 14099] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 8654-9007 bp Ori: OOA80408.1 Feature: domain Description: YvlD Location: 8657-8987 bp Feature: domain Description: YvlD Location: 865 7-8987 bp Feature: gene Location: 9038-9868 bp Ori: OOA80409.1 Feature: domain Description: fadh2 Location: 9056-9860 bp Feature: domain Description: fadh2 Location: 905 6-9860 bp Feature: gene Location: 10341-11738 bp Ori: OOA80410.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10674-11292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10674-11292 bp Feature: domain Description: GIIM Note: maturase Location: 11343-11553 bp Feature: domain Description: GIIM Note: maturase Location: 11343-115 5 3 bp Feature: gene Location: 11848-13326 bp Ori: OOA80422.1 Feature: domain Description: GatA Location: 11875-13303 bp Feature: domain Description: GatA Location: 11875 -13303 bp Feature: gene Location: 13407-14099 bp Ori: OOA80411.1 Feature: domain Description: DLH Location: 13419-14097 bp Feature: domain Description: DLH Location: 13419-14097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)