myRT

myRT report for GCA_001994215.1_ASM199421v1

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Seq: MUWI01000127.1 Burkholderia cenocepacia strain VC6900 VC6900_contig-9000010, whole genome shotgun sequence (175152 bp)
Overview 1 RT 1: 57015-65611 bp Neighborhood of RT #1 [57015, 65613] SIR2_2 YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 57015-57854 bp Ori: OOA42248.1 Feature: domain Description: SIR2_2 Location: 57189-57633 bp Feature: domain Description: SIR2_2 Location: 571 89-57633 bp Feature: gene Location: 57847-59568 bp Ori: OOA42249.1 Feature: domain Description: YjgR Location: 58330-58594 bp Feature: domain Description: YjgR Location: 58330-58594 bp Feature: domain Description: YjgR Location: 59089-59491 bp Feature: domain Description: YjgR Location: 59089-59491 bp Feature: gene Location: 59663-61414 bp Ori: OOA42250.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59798-60440 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59798-60440 bp Feature: gene Location: 61840-64314 bp Ori: OOA42251.1 Feature: domain Description: gyrB Location: 61870-64312 bp Feature: domain Description: gyrB Location: 61 870-6431 2 bp Feature: gene Location: 64507-65613 bp Ori: OOA42252.1 Feature: domain Description: PRK05643 Location: 64519-65611 bp Feature: domain Description: PRK05643 Location: 6451 9-6561 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-Retrons, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated)

Seq: MUWI01000122.1 Burkholderia cenocepacia strain VC6900 VC6900_contig-4000010, whole genome shotgun sequence (43534 bp)
Overview 1 RT 1: 27372-32815 bp Neighborhood of RT #1 [27372, 32817] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 27372-27725 bp Ori: OOA42856.1 Feature: domain Description: YvlD Location: 27375-27705 bp Feature: domain Description: YvlD Location: 2 7375-2 7705 bp Feature: gene Location: 27756-28586 bp Ori: OOA42857.1 Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: domain Description: fadh2 Location: 2 7774-2 8578 bp Feature: gene Location: 29059-30456 bp Ori: OOA42858.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29392-30010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9392 -30010 bp Feature: domain Description: GIIM Note: maturase Location: 30061-30271 bp Feature: domain Description: GIIM Note: maturase Location: 30061-302 71 bp Feature: gene Location: 30566-32044 bp Ori: OOA42871.1 Feature: domain Description: GatA Location: 30593-32021 bp Feature: domain Description: GatA Location: 30593-32 02 1 bp Feature: gene Location: 32125-32817 bp Ori: OOA42859.1 Feature: domain Description: DLH Location: 32137-32815 bp Feature: domain Description: DLH Location: 32 137-32 815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)

Seq: MUWI01000097.1 Burkholderia cenocepacia strain VC6900 VC6900_contig-11000007, whole genome shotgun sequence (273939 bp)
Overview 1 RT 1: 156390-160205 bp Neighborhood of RT #1 [156390, 160210] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 156390-156719 bp Ori: OOA46619.1 Feature: domain Description: Histone_HNS Location: 156411-156648 bp Feature: domain Description: Histone_HNS Location: 156411-156648 bp Feature: gene Location: 156866-157072 bp Feature: gene Location: 157045-158394 bp Ori: OOA46621.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 157510-158146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 157510-158146 bp Feature: gene Location: 158648-159220 bp Ori: OOA46622.1 Feature: domain Description: FIN Location: 158834-159185 bp Feature: domain Description: FIN Location: 15883 4-159185 bp Feature: gene Location: 159455-160210 bp Ori: OOA46623.1 Feature: domain Description: his_ut_repres Location: 159533-160205 bp Feature: domain Description: his_ut_repres Location: 15953 3 -160205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWI01000134.1 Burkholderia cenocepacia strain VC6900 VC6900_contig-6000011, whole genome shotgun sequence (135425 bp)
Overview 1 RT 1: 21276-30920 bp Neighborhood of RT #1 [21276, 30920] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 21276-22694 bp Ori: OOA40976.1 Feature: domain Description: MFS_SV2_like Location: 21396-22647 bp Feature: domain Description: MFS_SV2_like Location: 21396-2264 7 bp Feature: gene Location: 23142-25604 bp Ori: OOA40977.1 Feature: domain Description: MscK Location: 23220-25563 bp Feature: domain Description: MscK Location: 23220-25563 bp Feature: gene Location: 25748-27115 bp Ori: OOA40978.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26081-26696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26081-26696 bp Feature: domain Description: GIIM Note: maturase Location: 26756-26957 bp Feature: domain Description: GIIM Note: maturase Location: 26756-26957 bp Feature: gene Location: 27186-27515 bp Feature: gene Location: 27645-30920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUWI01000026.1 Burkholderia cenocepacia strain VC6900 VC6900_contig-4000001, whole genome shotgun sequence (16263 bp)
Overview 1 RT 1: 1-6667 bp Neighborhood of RT #1 [1, 6667] IS285 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-467 bp Ori: OOA55464.1 Feature: domain Description: IS285 Location: 55-466 bp Feature: domain Description: IS285 Location: 5 5 -466 bp Feature: gene Location: 652-3645 bp Ori: OOA55474.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-1597 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-15 97 bp Feature: gene Location: 3711-5726 bp Ori: OOA55465.1 Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: gene Location: 5978-6667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-UG5, HATPase_c_3 (pfam13589)