myRT

myRT report for GCA_001994255.1_ASM199425v1

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Seq: MUWK01000016.1 Burkholderia cenocepacia strain VC7777 VC7777_contig-7000001, whole genome shotgun sequence (43901 bp)
Overview 1 RT 1: 27372-32815 bp Neighborhood of RT #1 [27372, 32817] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 27372-27725 bp Ori: OOA77227.1 Feature: domain Description: YvlD Location: 27375-27705 bp Feature: domain Description: YvlD Location: 27375-27705 bp Feature: gene Location: 27756-28586 bp Ori: OOA77228.1 Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: gene Location: 29059-30456 bp Ori: OOA77229.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29392-30010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29392-3001 0 bp Feature: domain Description: GIIM Note: maturase Location: 30061-30271 bp Feature: domain Description: GIIM Note: maturase Location: 30061 -30271 bp Feature: gene Location: 30566-32044 bp Ori: OOA77240.1 Feature: domain Description: GatA Location: 30593-32021 bp Feature: domain Description: GatA Location: 30593-32021 bp Feature: gene Location: 32125-32817 bp Ori: OOA77230.1 Feature: domain Description: DLH Location: 32137-32815 bp Feature: domain Description: DLH Location: 321 37-3281 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)

Seq: MUWK01000008.1 Burkholderia cenocepacia strain VC7777 VC7777_contig-7000000, whole genome shotgun sequence (55626 bp)
Overview 1 RT 1: 9-2988 bp 2 RT 2: 52381-55618 bp Neighborhood of RT #1 [9, 3002] RVT-GII GIIM IS285 Neighborhood of RT #2 [52381, 55618] PRK14673 RsmI RVT-GII GIIM Feature: gene Location: 9-338 bp Feature: gene Location: 409-1707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742 -1357 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: gene Location: 1734-3002 bp Ori: OOA77928.1 Feature: domain Description: IS285 Location: 1818-2988 bp Feature: domain Description: IS2 85 Location: 1818-2 988 bp Feature: gene Location: 52381-52857 bp Ori: OOA77970.1 Feature: domain Description: PRK14673 Location: 52432-52849 bp Feature: domain Description: PRK14673 Location: 52 432 -52 849 bp Feature: gene Location: 52856-53743 bp Ori: OOA77971.1 Feature: domain Description: RsmI Location: 52904-53717 bp Feature: domain Description: RsmI Location: 52 904-53717 bp Feature: gene Location: 53851-55218 bp Ori: OOA77972.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54184-54799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54184-54799 bp Feature: domain Description: GIIM Note: maturase Location: 54859-55060 bp Feature: domain Description: GIIM Note: maturase Location: 54859-55060 bp Feature: gene Location: 55289-55618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IS285 (COG3328), PRK14673 (hypothetical protein; Provisional), RsmI (COG0313)

Seq: MUWK01000028.1 Burkholderia cenocepacia strain VC7777 VC7777_contig-8000002, whole genome shotgun sequence (3638 bp)
Overview 1 RT 1: 1-3637 bp Neighborhood of RT #1 [1, 3638] PRK09413 RVT-UG5 IS285 Feature: gene Location: 1-311 bp Ori: OOA75347.1 Feature: domain Description: PRK09413 Location: 19-310 bp Feature: domain Description: PRK09413 Location: 19-3 10 bp Feature: gene Location: 456-2987 bp Ori: OOA75348.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 465-939 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 465-93 9 bp Feature: gene Location: 3172-3638 bp Ori: OOA75346.1 Feature: domain Description: IS285 Location: 3226-3637 bp Feature: domain Description: IS285 Location: 3 226-3 63 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-UG5, IS285 (COG3328)

Seq: MUWK01000053.1 Burkholderia cenocepacia strain VC7777 VC7777_contig-4000005, whole genome shotgun sequence (119378 bp)
Overview 1 RT 1: 109542-117919 bp Neighborhood of RT #1 [109542, 118140] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 109542-110648 bp Ori: OOA72486.1 Feature: domain Description: PRK05643 Location: 109554-110646 bp Feature: domain Description: PRK0564 3 Location: 109554 -11064 6 bp Feature: gene Location: 110841-113315 bp Ori: OOA72487.1 Feature: domain Description: gyrB Location: 110871-113313 bp Feature: domain Description: gyrB Location: 110871-113313 bp Feature: gene Location: 113741-115492 bp Ori: OOA72488.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113876-114518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113876-114 518 bp Feature: gene Location: 115587-117308 bp Ori: OOA72489.1 Feature: domain Description: YjgR Location: 116070-116334 bp Feature: domain Description: YjgR Location: 116070-116334 bp Feature: domain Description: YjgR Location: 116829-117231 bp Feature: domain Description: YjgR Location: 116829-117231 bp Feature: gene Location: 117301-118140 bp Ori: OOA72490.1 Feature: domain Description: SIR2_2 Location: 117475-117919 bp Feature: domain Description: SIR2_2 Location: 1174 75-117919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWK01000077.1 Burkholderia cenocepacia strain VC7777 VC7777_contig-1000008, whole genome shotgun sequence (148733 bp)
Overview 1 RT 1: 125661-129476 bp Neighborhood of RT #1 [125661, 129481] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125661-125990 bp Ori: OOA68746.1 Feature: domain Description: Histone_HNS Location: 125682-125919 bp Feature: domain Description: Histone_HNS Location: 125 682-125 919 bp Feature: gene Location: 126137-126343 bp Feature: gene Location: 126316-127665 bp Ori: OOA68748.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126781-127417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126781-127417 bp Feature: gene Location: 127919-128491 bp Ori: OOA68749.1 Feature: domain Description: FIN Location: 128105-128456 bp Feature: domain Description: FIN Location: 128105 -12845 6 bp Feature: gene Location: 128726-129481 bp Ori: OOA68750.1 Feature: domain Description: his_ut_repres Location: 128804-129476 bp Feature: domain Description: his_ut_repres Location: 128804-129476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)