myRT

myRT report for GCA_001994265.1_ASM199426v1

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Seq: MUWJ01000031.1 Burkholderia cenocepacia strain VC7526 VC7526_contig-9000002, whole genome shotgun sequence (43776 bp)
Overview 1 RT 1: 11104-16529 bp Neighborhood of RT #1 [11104, 16549] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 11104-11796 bp Ori: OOA73277.1 Feature: domain Description: DLH Location: 11116-11794 bp Feature: domain Description: DLH Location: 1 1 1 1 6-1 1 794 bp Feature: gene Location: 11877-13355 bp Ori: OOA73310.1 Feature: domain Description: GatA Location: 11904-13332 bp Feature: domain Description: GatA Location: 1 1 904-1 3332 bp Feature: gene Location: 13465-14862 bp Ori: OOA73278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13798-14416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3798-1 441 6 bp Feature: domain Description: GIIM Note: maturase Location: 14467-14677 bp Feature: domain Description: GIIM Note: maturase Location: 1 4467-1 4677 bp Feature: gene Location: 15335-16165 bp Ori: OOA73279.1 Feature: domain Description: fadh2 Location: 15353-16157 bp Feature: domain Description: fadh2 Location: 1 5353-1 61 57 bp Feature: gene Location: 16196-16549 bp Ori: OOA73280.1 Feature: domain Description: YvlD Location: 16199-16529 bp Feature: domain Description: YvlD Location: 1 61 99-1 6529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWJ01000069.1 Burkholderia cenocepacia strain VC7526 VC7526_contig-1000006, whole genome shotgun sequence (208506 bp)
Overview 1 RT 1: 100725-104540 bp Neighborhood of RT #1 [100725, 104545] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 100725-101054 bp Ori: OOA67943.1 Feature: domain Description: Histone_HNS Location: 100746-100983 bp Feature: domain Description: Histone_HNS Location: 100746-100983 bp Feature: gene Location: 101201-101407 bp Feature: gene Location: 101380-102729 bp Ori: OOA67945.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101845-102481 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101845-102 481 bp Feature: gene Location: 102983-103555 bp Ori: OOA67946.1 Feature: domain Description: FIN Location: 103169-103520 bp Feature: domain Description: FIN Location: 103169-10352 0 bp Feature: gene Location: 103790-104545 bp Ori: OOA67947.1 Feature: domain Description: his_ut_repres Location: 103868-104540 bp Feature: domain Description: his_ut_repres Location: 103868-104540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWJ01000188.1 Burkholderia cenocepacia strain VC7526 VC7526_contig-1000015, whole genome shotgun sequence (119378 bp)
Overview 1 RT 1: 109542-117919 bp Neighborhood of RT #1 [109542, 118140] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 109542-110648 bp Ori: OOA53696.1 Feature: domain Description: PRK05643 Location: 109554-110646 bp Feature: domain Description: PRK05643 Location: 109554-110646 bp Feature: gene Location: 110841-113315 bp Ori: OOA53697.1 Feature: domain Description: gyrB Location: 110871-113313 bp Feature: domain Description: gyrB Location: 110871-113 3 13 bp Feature: gene Location: 113741-115492 bp Ori: OOA53698.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113876-114518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113 876-114518 bp Feature: gene Location: 115587-117308 bp Ori: OOA53699.1 Feature: domain Description: YjgR Location: 116070-116334 bp Feature: domain Description: YjgR Location: 116070-1163 3 4 bp Feature: domain Description: YjgR Location: 116829-117231 bp Feature: domain Description: YjgR Location: 116829-11723 1 bp Feature: gene Location: 117301-118140 bp Ori: OOA53700.1 Feature: domain Description: SIR2_2 Location: 117475-117919 bp Feature: domain Description: SIR2_2 Location: 117475-117919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWJ01000020.1 Burkholderia cenocepacia strain VC7526 VC7526_contig-6000001, whole genome shotgun sequence (54870 bp)
Overview 1 RT 1: 1-5734 bp Neighborhood of RT #1 [1, 5742] RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 1-2375 bp Feature: gene Location: 2505-2834 bp Feature: gene Location: 2905-4272 bp Ori: OOA74482.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3238-3853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3238-3853 bp Feature: domain Description: GIIM Note: maturase Location: 3913-4114 bp Feature: domain Description: GIIM Note: maturase Location: 3913-4 114 bp Feature: gene Location: 4380-5267 bp Ori: OOA74483.1 Feature: domain Description: RsmI Location: 4428-5241 bp Feature: domain Description: RsmI Location: 4 4 28-524 1 bp Feature: gene Location: 5266-5742 bp Ori: OOA74484.1 Feature: domain Description: PRK14673 Location: 5317-5734 bp Feature: domain Description: PRK14 673 Location: 5317-5734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUWJ01000033.1 Burkholderia cenocepacia strain VC7526 VC7526_contig-11000002, whole genome shotgun sequence (3738 bp)
Overview 1 RT 1: 46-3737 bp Neighborhood of RT #1 [46, 3738] PRK09413 RVT-UG5 IS285 Feature: gene Location: 46-420 bp Ori: OOA73142.1 Feature: domain Description: PRK09413 Location: 73-415 bp Feature: domain Description: PRK09413 Location: 73-415 bp Feature: gene Location: 556-3087 bp Ori: OOA73144.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 565-1039 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5 65 -1039 bp Feature: gene Location: 3272-3738 bp Ori: OOA73143.1 Feature: domain Description: IS285 Location: 3326-3737 bp Feature: domain Description: IS285 Location: 3326-3737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-UG5, IS285 (COG3328)