myRT

myRT report for GCA_001994285.1_ASM199428v1

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Seq: MUWL01000073.1 Burkholderia cenocepacia strain VC7964 VC7964_contig-15000006, whole genome shotgun sequence (1864 bp)
Overview 1 RT 1: 9-1618 bp Neighborhood of RT #1 [9, 1776] RVT-GII GIIM Feature: gene Location: 9-338 bp Feature: gene Location: 409-1776 bp Ori: OOB08214.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1 357 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 7-1 61 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUWL01000133.1 Burkholderia cenocepacia strain VC7964 VC7964_contig-13, whole genome shotgun sequence (254158 bp)
Overview 1 RT 1: 104010-107759 bp Neighborhood of RT #1 [104010, 107830] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 104010-104765 bp Ori: OOB00087.1 Feature: domain Description: his_ut_repres Location: 104088-104760 bp Feature: domain Description: his_ut_repres Location: 104088-104760 bp Feature: gene Location: 105000-105572 bp Ori: OOB00088.1 Feature: domain Description: FIN Location: 105186-105537 bp Feature: domain Description: FIN Location: 105186-105537 bp Feature: gene Location: 105826-107175 bp Ori: OOB00089.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106291-106927 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1062 91-10692 7 bp Feature: gene Location: 107148-107354 bp Feature: gene Location: 107501-107830 bp Ori: OOB00091.1 Feature: domain Description: Histone_HNS Location: 107522-107759 bp Feature: domain Description: Histone_HNS Location: 10752 2 -107759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUWL01000043.1 Burkholderia cenocepacia strain VC7964 VC7964_contig-3000004, whole genome shotgun sequence (42837 bp)
Overview 1 RT 1: 33001-41378 bp Neighborhood of RT #1 [33001, 41599] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 33001-34107 bp Ori: OOB12466.1 Feature: domain Description: PRK05643 Location: 33013-34105 bp Feature: domain Description: PRK05643 Location: 3 3 013 -3 4105 bp Feature: gene Location: 34300-36774 bp Ori: OOB12467.1 Feature: domain Description: gyrB Location: 34330-36772 bp Feature: domain Description: gyrB Location: 3 43 3 0-3 6772 bp Feature: gene Location: 37200-38951 bp Ori: OOB12468.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37335-37977 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 73 3 5-3 7977 bp Feature: gene Location: 39046-40767 bp Ori: OOB12469.1 Feature: domain Description: YjgR Location: 39529-39793 bp Feature: domain Description: YjgR Location: 3 9529-3 9793 bp Feature: domain Description: YjgR Location: 40288-40690 bp Feature: domain Description: YjgR Location: 40288-40690 bp Feature: gene Location: 40760-41599 bp Ori: OOB12470.1 Feature: domain Description: SIR2_2 Location: 40934-41378 bp Feature: domain Description: SIR2_2 Location: 4093 4-413 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWL01000026.1 Burkholderia cenocepacia strain VC7964 VC7964_contig-6000002, whole genome shotgun sequence (3638 bp)
Overview 1 RT 1: 1-3637 bp Neighborhood of RT #1 [1, 3638] PRK09413 RVT-UG5 IS285 Feature: gene Location: 1-311 bp Ori: OOB13955.1 Feature: domain Description: PRK09413 Location: 19-310 bp Feature: domain Description: PRK094 13 Location: 19-310 bp Feature: gene Location: 456-2987 bp Ori: OOB13956.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 465-939 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 65-939 bp Feature: gene Location: 3172-3638 bp Ori: OOB13954.1 Feature: domain Description: IS285 Location: 3226-3637 bp Feature: domain Description: IS285 Location: 3226-3637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-UG5, IS285 (COG3328)

Seq: MUWL01000005.1 Burkholderia cenocepacia strain VC7964 VC7964_contig-4000000, whole genome shotgun sequence (43534 bp)
Overview 1 RT 1: 27372-32815 bp Neighborhood of RT #1 [27372, 32817] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 27372-27725 bp Ori: OOB16934.1 Feature: domain Description: YvlD Location: 27375-27705 bp Feature: domain Description: YvlD Location: 27375 -27705 bp Feature: gene Location: 27756-28586 bp Ori: OOB16935.1 Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: domain Description: fadh2 Location: 27774-285 78 bp Feature: gene Location: 29059-30456 bp Ori: OOB16936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29392-30010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29392-30010 bp Feature: domain Description: GIIM Note: maturase Location: 30061-30271 bp Feature: domain Description: GIIM Note: maturase Location: 30061-30271 bp Feature: gene Location: 30566-32044 bp Ori: OOB16949.1 Feature: domain Description: GatA Location: 30593-32021 bp Feature: domain Description: GatA Location: 305 93-32021 bp Feature: gene Location: 32125-32817 bp Ori: OOB16937.1 Feature: domain Description: DLH Location: 32137-32815 bp Feature: domain Description: DLH Location: 32137-32815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)