myRT

myRT report for GCA_001994315.1_ASM199431v1

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Seq: MUWM01000141.1 Burkholderia cenocepacia strain VC7965 VC7965_contig-10000012, whole genome shotgun sequence (122126 bp)
Overview 1 RT 1: 88-2355 bp Neighborhood of RT #1 [88, 2357] RVT-GII GIIM COG1981 Feature: gene Location: 88-1455 bp Ori: OOB03248.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 -1 036 bp Feature: domain Description: GIIM Note: maturase Location: 1096-1297 bp Feature: domain Description: GIIM Note: maturase Location: 1 096-1 297 bp Feature: gene Location: 1526-1855 bp Feature: gene Location: 1941-2357 bp Ori: OOB03249.1 Feature: domain Description: COG1981 Location: 1944-2355 bp Feature: domain Description: COG1 981 Location: 1 944-2355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG1981 (Uncharacterized membrane protein )

Seq: MUWM01000092.1 Burkholderia cenocepacia strain VC7965 VC7965_contig-8, whole genome shotgun sequence (261839 bp)
Overview 1 RT 1: 146473-150288 bp Neighborhood of RT #1 [146473, 150293] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 146473-146802 bp Ori: OOB09310.1 Feature: domain Description: Histone_HNS Location: 146494-146731 bp Feature: domain Description: Histone_HNS Location: 146494-146731 bp Feature: gene Location: 146949-147155 bp Feature: gene Location: 147128-148477 bp Ori: OOB09312.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147593-148229 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147593-1482 2 9 bp Feature: gene Location: 148731-149303 bp Ori: OOB09313.1 Feature: domain Description: FIN Location: 148917-149268 bp Feature: domain Description: FIN Location: 148917-1492 68 bp Feature: gene Location: 149538-150293 bp Ori: OOB09314.1 Feature: domain Description: his_ut_repres Location: 149616-150288 bp Feature: domain Description: his_ut_repres Location: 149616-1502 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWM01000053.1 Burkholderia cenocepacia strain VC7965 VC7965_contig-9000004, whole genome shotgun sequence (43534 bp)
Overview 1 RT 1: 10718-16143 bp Neighborhood of RT #1 [10718, 16163] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 10718-11410 bp Ori: OOB13747.1 Feature: domain Description: DLH Location: 10730-11408 bp Feature: domain Description: DLH Location: 1073 0-11408 bp Feature: gene Location: 11491-12969 bp Ori: OOB13779.1 Feature: domain Description: GatA Location: 11518-12946 bp Feature: domain Description: GatA Location: 11518-12946 bp Feature: gene Location: 13079-14476 bp Ori: OOB13748.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13412-14030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 412-1403 0 bp Feature: domain Description: GIIM Note: maturase Location: 14081-14291 bp Feature: domain Description: GIIM Note: maturase Location: 14081-14291 bp Feature: gene Location: 14949-15779 bp Ori: OOB13749.1 Feature: domain Description: fadh2 Location: 14967-15771 bp Feature: domain Description: fadh2 Location: 14967-15771 bp Feature: gene Location: 15810-16163 bp Ori: OOB13750.1 Feature: domain Description: YvlD Location: 15813-16143 bp Feature: domain Description: YvlD Location: 15813 -16143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWM01000007.1 Burkholderia cenocepacia strain VC7965 VC7965_contig-6000000, whole genome shotgun sequence (6063 bp)
Overview 1 RT 1: 1-6062 bp Neighborhood of RT #1 [1, 6063] PRK09413 HATPase_c_3 RVT-UG5 IS285 Feature: gene Location: 1-227 bp Ori: OOB19725.1 Feature: domain Description: PRK09413 Location: 55-226 bp Feature: domain Description: PRK094 13 Location: 55-226 bp Feature: gene Location: 338-2353 bp Ori: OOB19723.1 Feature: domain Description: HATPase_c_3 Location: 407-731 bp Feature: domain Description: HATPase_c_3 Location: 4 07-731 bp Feature: gene Location: 2419-5412 bp Ori: OOB19726.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2890-3364 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2890-3364 bp Feature: gene Location: 5597-6063 bp Ori: OOB19724.1 Feature: domain Description: IS285 Location: 5651-6062 bp Feature: domain Description: IS285 Location: 5651-6062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328)

Seq: MUWM01000159.1 Burkholderia cenocepacia strain VC7965 VC7965_contig-11000014, whole genome shotgun sequence (119371 bp)
Overview 1 RT 1: 1239-9835 bp Neighborhood of RT #1 [1239, 9837] SIR2_2 YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 1239-2078 bp Ori: OOB00597.1 Feature: domain Description: SIR2_2 Location: 1413-1857 bp Feature: domain Description: SIR2_2 Location: 1413-185 7 bp Feature: gene Location: 2071-3792 bp Ori: OOB00598.1 Feature: domain Description: YjgR Location: 2554-2818 bp Feature: domain Description: YjgR Location: 25 5 4-2818 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: gene Location: 3887-5638 bp Ori: OOB00599.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4022-4664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4022-4664 bp Feature: gene Location: 6064-8538 bp Ori: OOB00600.1 Feature: domain Description: gyrB Location: 6094-8536 bp Feature: domain Description: gyrB Location: 6094-85 36 bp Feature: gene Location: 8731-9837 bp Ori: OOB00601.1 Feature: domain Description: PRK05643 Location: 8743-9835 bp Feature: domain Description: PRK05 643 Location: 8743-9835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-Retrons, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated)