myRT

myRT report for GCA_001994335.1_ASM199433v1

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Seq: MUWN01000122.1 Burkholderia cenocepacia strain VC8069 VC8069_contig-5000011, whole genome shotgun sequence (43901 bp)
Overview 1 RT 1: 11085-16510 bp Neighborhood of RT #1 [11085, 16530] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 11085-11777 bp Ori: OOA82507.1 Feature: domain Description: DLH Location: 11097-11775 bp Feature: domain Description: DLH Location: 1 1 097-1 1 775 bp Feature: gene Location: 11858-13336 bp Ori: OOA82540.1 Feature: domain Description: GatA Location: 11885-13313 bp Feature: domain Description: GatA Location: 1 1 885-1 331 3 bp Feature: gene Location: 13446-14843 bp Ori: OOA82508.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13779-14397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3779-1 4397 bp Feature: domain Description: GIIM Note: maturase Location: 14448-14658 bp Feature: domain Description: GIIM Note: maturase Location: 1 4448-1 4658 bp Feature: gene Location: 15316-16146 bp Ori: OOA82509.1 Feature: domain Description: fadh2 Location: 15334-16138 bp Feature: domain Description: fadh2 Location: 1 5334-1 61 38 bp Feature: gene Location: 16177-16530 bp Ori: OOA82510.1 Feature: domain Description: YvlD Location: 16180-16510 bp Feature: domain Description: YvlD Location: 1 61 80-1 651 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWN01000146.1 Burkholderia cenocepacia strain VC8069 VC8069_contig-4000014, whole genome shotgun sequence (16429 bp)
Overview 1 RT 1: 9763-16428 bp Neighborhood of RT #1 [9763, 16429] HATPase_c_3 RVT-UG5 IS285 Feature: gene Location: 9763-10452 bp Feature: gene Location: 10704-12719 bp Ori: OOA79332.1 Feature: domain Description: HATPase_c_3 Location: 10773-11097 bp Feature: domain Description: HATPase_c_3 Location: 10773-11097 bp Feature: gene Location: 12785-15778 bp Ori: OOA79334.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13256-13730 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 132 56-13730 bp Feature: gene Location: 15963-16429 bp Ori: OOA79333.1 Feature: domain Description: IS285 Location: 16017-16428 bp Feature: domain Description: IS2 85 Location: 16017-1642 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328)

Seq: MUWN01000137.1 Burkholderia cenocepacia strain VC8069 VC8069_contig-13, whole genome shotgun sequence (263950 bp)
Overview 1 RT 1: 113613-117362 bp Neighborhood of RT #1 [113613, 117433] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 113613-114368 bp Ori: OOA80519.1 Feature: domain Description: his_ut_repres Location: 113691-114363 bp Feature: domain Description: his_ut_repres Location: 113 691-1143 63 bp Feature: gene Location: 114603-115175 bp Ori: OOA80520.1 Feature: domain Description: FIN Location: 114789-115140 bp Feature: domain Description: FIN Location: 114789-115140 bp Feature: gene Location: 115429-116778 bp Ori: OOA80521.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 115894-116530 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 115894-11653 0 bp Feature: gene Location: 116751-116957 bp Feature: gene Location: 117104-117433 bp Ori: OOA80523.1 Feature: domain Description: Histone_HNS Location: 117125-117362 bp Feature: domain Description: Histone_HNS Location: 117125-1173 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUWN01000105.1 Burkholderia cenocepacia strain VC8069 VC8069_contig-10, whole genome shotgun sequence (119371 bp)
Overview 1 RT 1: 1239-9835 bp Neighborhood of RT #1 [1239, 9837] SIR2_2 YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 1239-2078 bp Ori: OOA84604.1 Feature: domain Description: SIR2_2 Location: 1413-1857 bp Feature: domain Description: SIR2_2 Location: 14 13-1857 bp Feature: gene Location: 2071-3792 bp Ori: OOA84605.1 Feature: domain Description: YjgR Location: 2554-2818 bp Feature: domain Description: YjgR Location: 2554 -2818 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: gene Location: 3887-5638 bp Ori: OOA84606.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4022-4664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 022-4 664 bp Feature: gene Location: 6064-8538 bp Ori: OOA84607.1 Feature: domain Description: gyrB Location: 6094-8536 bp Feature: domain Description: gyrB Location: 6094 -8536 bp Feature: gene Location: 8731-9837 bp Ori: OOA84608.1 Feature: domain Description: PRK05643 Location: 8743-9835 bp Feature: domain Description: PRK0564 3 Location: 874 3-9835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-Retrons, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated)

Seq: MUWN01000026.1 Burkholderia cenocepacia strain VC8069 VC8069_contig-8000001, whole genome shotgun sequence (2007 bp)
Overview 1 RT 1: 1-1999 bp Neighborhood of RT #1 [1, 1999] RVT-GII GIIM Feature: gene Location: 1-232 bp Feature: gene Location: 256-1599 bp Ori: OOA95047.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 589-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 89-1204 bp Feature: domain Description: GIIM Note: maturase Location: 1264-1465 bp Feature: domain Description: GIIM Note: maturase Location: 1264-1465 bp Feature: gene Location: 1670-1999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)