myRT

myRT report for GCA_001994345.1_ASM199434v1

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Seq: MUWO01000064.1 Burkholderia cenocepacia strain VC8068 VC8068_contig-3000005, whole genome shotgun sequence (119370 bp)
Overview 1 RT 1: 109534-117911 bp Neighborhood of RT #1 [109534, 118132] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 109534-110640 bp Ori: OOB18341.1 Feature: domain Description: PRK05643 Location: 109546-110638 bp Feature: domain Description: PRK05643 Location: 1 09546-1 1 0638 bp Feature: gene Location: 110833-113307 bp Ori: OOB18342.1 Feature: domain Description: gyrB Location: 110863-113305 bp Feature: domain Description: gyrB Location: 1 1 0863-1 1 3305 bp Feature: gene Location: 113733-115484 bp Ori: OOB18343.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113868-114510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 3868-1 1 451 0 bp Feature: gene Location: 115579-117300 bp Ori: OOB18344.1 Feature: domain Description: YjgR Location: 116062-116326 bp Feature: domain Description: YjgR Location: 1 1 6062-1 1 6326 bp Feature: domain Description: YjgR Location: 116821-117223 bp Feature: domain Description: YjgR Location: 1 1 6821 -1 1 7223 bp Feature: gene Location: 117293-118132 bp Ori: OOB18345.1 Feature: domain Description: SIR2_2 Location: 117467-117911 bp Feature: domain Description: SIR2_2 Location: 1 1 7467-1 1 791 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWO01000093.1 Burkholderia cenocepacia strain VC8068 VC8068_contig-10000007, whole genome shotgun sequence (52372 bp)
Overview 1 RT 1: 9-3238 bp Neighborhood of RT #1 [9, 3246] RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 9-338 bp Feature: gene Location: 409-1776 bp Ori: OOB14473.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742 -1357 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: gene Location: 1884-2771 bp Ori: OOB14474.1 Feature: domain Description: RsmI Location: 1932-2745 bp Feature: domain Description: RsmI Location: 1932 -2 745 bp Feature: gene Location: 2770-3246 bp Ori: OOB14475.1 Feature: domain Description: PRK14673 Location: 2821-3238 bp Feature: domain Description: PRK14673 Location: 2 82 1-32 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUWO01000065.1 Burkholderia cenocepacia strain VC8068 VC8068_contig-4000005, whole genome shotgun sequence (43534 bp)
Overview 1 RT 1: 27372-32815 bp Neighborhood of RT #1 [27372, 32817] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 27372-27725 bp Ori: OOB18078.1 Feature: domain Description: YvlD Location: 27375-27705 bp Feature: domain Description: YvlD Location: 273 75-27705 bp Feature: gene Location: 27756-28586 bp Ori: OOB18079.1 Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: gene Location: 29059-30456 bp Ori: OOB18080.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29392-30010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 92-3 0010 bp Feature: domain Description: GIIM Note: maturase Location: 30061-30271 bp Feature: domain Description: GIIM Note: maturase Location: 3 0061-3 0271 bp Feature: gene Location: 30566-32044 bp Ori: OOB18093.1 Feature: domain Description: GatA Location: 30593-32021 bp Feature: domain Description: GatA Location: 3 0593 -3 2021 bp Feature: gene Location: 32125-32817 bp Ori: OOB18081.1 Feature: domain Description: DLH Location: 32137-32815 bp Feature: domain Description: DLH Location: 3 213 7-3 2815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)

Seq: MUWO01000032.1 Burkholderia cenocepacia strain VC8068 VC8068_contig-15000002, whole genome shotgun sequence (261936 bp)
Overview 1 RT 1: 146417-150232 bp Neighborhood of RT #1 [146417, 150237] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 146417-146746 bp Ori: OOB22101.1 Feature: domain Description: Histone_HNS Location: 146438-146675 bp Feature: domain Description: Histone_HNS Location: 14 64 38-14 6675 bp Feature: gene Location: 146893-147099 bp Feature: gene Location: 147072-148421 bp Ori: OOB22103.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147537-148173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 7537-14 8173 bp Feature: gene Location: 148675-149247 bp Ori: OOB22104.1 Feature: domain Description: FIN Location: 148861-149212 bp Feature: domain Description: FIN Location: 14 8861-14 9212 bp Feature: gene Location: 149482-150237 bp Ori: OOB22105.1 Feature: domain Description: his_ut_repres Location: 149560-150232 bp Feature: domain Description: his_ut_repres Location: 14 9560-150232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWO01000153.1 Burkholderia cenocepacia strain VC8068 VC8068_contig-9000012, whole genome shotgun sequence (6006 bp)
Overview 1 RT 1: 1-6005 bp Neighborhood of RT #1 [1, 6006] PRK09413 HATPase_c_3 RVT-UG5 IS285 Feature: gene Location: 1-170 bp Ori: OOB07505.1 Feature: domain Description: PRK09413 Location: 55-166 bp Feature: domain Description: PRK09413 Location: 5 5 -166 bp Feature: gene Location: 281-2296 bp Ori: OOB07503.1 Feature: domain Description: HATPase_c_3 Location: 350-674 bp Feature: domain Description: HATPase_c_3 Location: 35 0-674 bp Feature: gene Location: 2362-5355 bp Ori: OOB07506.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2833-3307 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2833-3307 bp Feature: gene Location: 5540-6006 bp Ori: OOB07504.1 Feature: domain Description: IS285 Location: 5594-6005 bp Feature: domain Description: IS285 Location: 5 5 94-6005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328)