myRT

myRT report for GCA_001994375.1_ASM199437v1

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Seq: MUWP01000025.1 Burkholderia cenocepacia strain VC8542 VC8542_contig-9000001, whole genome shotgun sequence (57861 bp)
Overview 1 RT 1: 1-5099 bp Neighborhood of RT #1 [1, 5099] RVT-GII GIIM Feature: gene Location: 1-1267 bp Ori: OOB38552.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1 009-1 21 0 bp Feature: gene Location: 1338-1667 bp Feature: gene Location: 1797-5099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUWP01000164.1 Burkholderia cenocepacia strain VC8542 VC8542_contig-7000012, whole genome shotgun sequence (6063 bp)
Overview 1 RT 1: 1-6062 bp Neighborhood of RT #1 [1, 6063] PRK09413 HATPase_c_3 RVT-UG5 IS285 Feature: gene Location: 1-227 bp Ori: OOB23639.1 Feature: domain Description: PRK09413 Location: 55-226 bp Feature: domain Description: PRK09413 Location: 55-2 2 6 bp Feature: gene Location: 338-2353 bp Ori: OOB23637.1 Feature: domain Description: HATPase_c_3 Location: 407-731 bp Feature: domain Description: HATPase_c_3 Location: 407-731 bp Feature: gene Location: 2419-5412 bp Ori: OOB23640.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2890-3364 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 890-3364 bp Feature: gene Location: 5597-6063 bp Ori: OOB23638.1 Feature: domain Description: IS285 Location: 5651-6062 bp Feature: domain Description: IS2 85 Location: 5651-6062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328)

Seq: MUWP01000011.1 Burkholderia cenocepacia strain VC8542 VC8542_contig-10000000, whole genome shotgun sequence (43068 bp)
Overview 1 RT 1: 33232-41609 bp Neighborhood of RT #1 [33232, 41830] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 33232-34338 bp Ori: OOB40129.1 Feature: domain Description: PRK05643 Location: 33244-34336 bp Feature: domain Description: PRK05643 Location: 3 3 244-3 43 3 6 bp Feature: gene Location: 34531-37005 bp Ori: OOB40130.1 Feature: domain Description: gyrB Location: 34561-37003 bp Feature: domain Description: gyrB Location: 3 4561-3 7003 bp Feature: gene Location: 37431-39182 bp Ori: OOB40131.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37566-38208 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 7566-3 8208 bp Feature: gene Location: 39277-40998 bp Ori: OOB40132.1 Feature: domain Description: YjgR Location: 39760-40024 bp Feature: domain Description: YjgR Location: 3 9760-40024 bp Feature: domain Description: YjgR Location: 40519-40921 bp Feature: domain Description: YjgR Location: 40519-40921 bp Feature: gene Location: 40991-41830 bp Ori: OOB40133.1 Feature: domain Description: SIR2_2 Location: 41165-41609 bp Feature: domain Description: SIR2_2 Location: 41165-41609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWP01000098.1 Burkholderia cenocepacia strain VC8542 VC8542_contig-8, whole genome shotgun sequence (240813 bp)
Overview 1 RT 1: 125348-129163 bp Neighborhood of RT #1 [125348, 129168] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125348-125677 bp Ori: OOB30243.1 Feature: domain Description: Histone_HNS Location: 125369-125606 bp Feature: domain Description: Histone_HNS Location: 125369-125606 bp Feature: gene Location: 125824-126030 bp Feature: gene Location: 126003-127352 bp Ori: OOB30245.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126468-127104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1264 68-127104 bp Feature: gene Location: 127606-128178 bp Ori: OOB30246.1 Feature: domain Description: FIN Location: 127792-128143 bp Feature: domain Description: FIN Location: 127792-12814 3 bp Feature: gene Location: 128413-129168 bp Ori: OOB30247.1 Feature: domain Description: his_ut_repres Location: 128491-129163 bp Feature: domain Description: his_ut_repres Location: 1284 91-129163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWP01000155.1 Burkholderia cenocepacia strain VC8542 VC8542_contig-13000011, whole genome shotgun sequence (45828 bp)
Overview 1 RT 1: 28338-33781 bp 2 RT 2: 43493-45771 bp Neighborhood of RT #1 [28338, 33783] YvlD fadh2 RVT-GII GIIM GatA DLH Neighborhood of RT #2 [43493, 45828] RlpA RVT-GII GIIM Feature: gene Location: 28338-28691 bp Ori: OOB24690.1 Feature: domain Description: YvlD Location: 28341-28671 bp Feature: domain Description: YvlD Location: 28341-28671 bp Feature: gene Location: 28722-29552 bp Ori: OOB24691.1 Feature: domain Description: fadh2 Location: 28740-29544 bp Feature: domain Description: fadh2 Location: 28740-295 44 bp Feature: gene Location: 30025-31422 bp Ori: OOB24692.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30358-30976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3035 8-30976 bp Feature: domain Description: GIIM Note: maturase Location: 31027-31237 bp Feature: domain Description: GIIM Note: maturase Location: 31027-31237 bp Feature: gene Location: 31532-33010 bp Ori: OOB24707.1 Feature: domain Description: GatA Location: 31559-32987 bp Feature: domain Description: GatA Location: 315 5 9-32987 bp Feature: gene Location: 33091-33783 bp Ori: OOB24693.1 Feature: domain Description: DLH Location: 33103-33781 bp Feature: domain Description: DLH Location: 33103-33781 bp Feature: gene Location: 43493-44104 bp Ori: OOB24702.1 Feature: domain Description: RlpA Location: 43565-44069 bp Feature: domain Description: RlpA Location: 435 65 -44069 bp Feature: gene Location: 44162-44491 bp Feature: gene Location: 44562-45828 bp Ori: OOB24709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44895-45510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44895 -45 5 10 bp Feature: domain Description: GIIM Note: maturase Location: 45570-45771 bp Feature: domain Description: GIIM Note: maturase Location: 45 5 70-45 771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738), RlpA (COG0797)