myRT

myRT report for GCA_001994395.1_ASM199439v1

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Seq: MUWQ01000129.1 Burkholderia cenocepacia strain VC8865 VC8865_contig-8000010, whole genome shotgun sequence (43534 bp)
Overview 1 RT 1: 10718-16143 bp Neighborhood of RT #1 [10718, 16163] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 10718-11410 bp Ori: OOA86532.1 Feature: domain Description: DLH Location: 10730-11408 bp Feature: domain Description: DLH Location: 1 0730-1 1 408 bp Feature: gene Location: 11491-12969 bp Ori: OOA86564.1 Feature: domain Description: GatA Location: 11518-12946 bp Feature: domain Description: GatA Location: 1 1 51 8-1 2946 bp Feature: gene Location: 13079-14476 bp Ori: OOA86533.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13412-14030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 341 2-1 4030 bp Feature: domain Description: GIIM Note: maturase Location: 14081-14291 bp Feature: domain Description: GIIM Note: maturase Location: 1 4081 -1 4291 bp Feature: gene Location: 14949-15779 bp Ori: OOA86534.1 Feature: domain Description: fadh2 Location: 14967-15771 bp Feature: domain Description: fadh2 Location: 1 4967-1 5771 bp Feature: gene Location: 15810-16163 bp Ori: OOA86535.1 Feature: domain Description: YvlD Location: 15813-16143 bp Feature: domain Description: YvlD Location: 1 581 3-1 61 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWQ01000144.1 Burkholderia cenocepacia strain VC8865 VC8865_contig-12000011, whole genome shotgun sequence (1863 bp)
Overview 1 RT 1: 88-1855 bp Neighborhood of RT #1 [88, 1855] RVT-GII GIIM Feature: gene Location: 88-1455 bp Ori: OOA85396.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 1-1036 bp Feature: domain Description: GIIM Note: maturase Location: 1096-1297 bp Feature: domain Description: GIIM Note: maturase Location: 1096-12 97 bp Feature: gene Location: 1526-1855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUWQ01000056.1 Burkholderia cenocepacia strain VC8865 VC8865_contig-2000004, whole genome shotgun sequence (118585 bp)
Overview 1 RT 1: 109542-117919 bp Neighborhood of RT #1 [109542, 118140] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 109542-110648 bp Ori: OOA95325.1 Feature: domain Description: PRK05643 Location: 109554-110646 bp Feature: domain Description: PRK05643 Location: 109554-110646 bp Feature: gene Location: 110841-113315 bp Ori: OOA95326.1 Feature: domain Description: gyrB Location: 110871-113313 bp Feature: domain Description: gyrB Location: 110871-113 3 13 bp Feature: gene Location: 113741-115492 bp Ori: OOA95327.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113876-114518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113 876-114518 bp Feature: gene Location: 115587-117308 bp Ori: OOA95328.1 Feature: domain Description: YjgR Location: 116070-116334 bp Feature: domain Description: YjgR Location: 116070-1163 3 4 bp Feature: domain Description: YjgR Location: 116829-117231 bp Feature: domain Description: YjgR Location: 116829-11723 1 bp Feature: gene Location: 117301-118140 bp Ori: OOA95329.1 Feature: domain Description: SIR2_2 Location: 117475-117919 bp Feature: domain Description: SIR2_2 Location: 117475-117919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWQ01000034.1 Burkholderia cenocepacia strain VC8865 VC8865_contig-5000002, whole genome shotgun sequence (282620 bp)
Overview 1 RT 1: 156723-160538 bp Neighborhood of RT #1 [156723, 160543] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 156723-157052 bp Ori: OOA97594.1 Feature: domain Description: Histone_HNS Location: 156744-156981 bp Feature: domain Description: Histone_HNS Location: 15674 4 -156981 bp Feature: gene Location: 157199-157405 bp Feature: gene Location: 157378-158727 bp Ori: OOA97596.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 157843-158479 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15784 3-1584 79 bp Feature: gene Location: 158981-159553 bp Ori: OOA97597.1 Feature: domain Description: FIN Location: 159167-159518 bp Feature: domain Description: FIN Location: 159167-159518 bp Feature: gene Location: 159788-160543 bp Ori: OOA97598.1 Feature: domain Description: his_ut_repres Location: 159866-160538 bp Feature: domain Description: his_ut_repres Location: 159866-160538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWQ01000124.1 Burkholderia cenocepacia strain VC8865 VC8865_contig-3000010, whole genome shotgun sequence (15906 bp)
Overview 1 RT 1: 1-6667 bp Neighborhood of RT #1 [1, 6667] IS285 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-467 bp Ori: OOA86839.1 Feature: domain Description: IS285 Location: 55-466 bp Feature: domain Description: IS285 Location: 5 5 -466 bp Feature: gene Location: 652-3645 bp Ori: OOA86849.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-1597 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-15 97 bp Feature: gene Location: 3711-5726 bp Ori: OOA86840.1 Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: gene Location: 5978-6667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-UG5, HATPase_c_3 (pfam13589)