myRT

myRT report for GCA_001994405.1_ASM199440v1

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Seq: MUWR01000109.1 Burkholderia cenocepacia strain VC9272 VC9272_contig-8, whole genome shotgun sequence (262094 bp)
Overview 1 RT 1: 111646-115395 bp Neighborhood of RT #1 [111646, 115466] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 111646-112401 bp Ori: OOB33074.1 Feature: domain Description: his_ut_repres Location: 111724-112396 bp Feature: domain Description: his_ut_repres Location: 1 1 1 724-1 1 2396 bp Feature: gene Location: 112636-113208 bp Ori: OOB33075.1 Feature: domain Description: FIN Location: 112822-113173 bp Feature: domain Description: FIN Location: 1 1 2822-1 1 31 73 bp Feature: gene Location: 113462-114811 bp Ori: OOB33076.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113927-114563 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 3927-1 1 4563 bp Feature: gene Location: 114784-114990 bp Feature: gene Location: 115137-115466 bp Ori: OOB33078.1 Feature: domain Description: Histone_HNS Location: 115158-115395 bp Feature: domain Description: Histone_HNS Location: 1 1 51 58-1 1 5395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUWR01000140.1 Burkholderia cenocepacia strain VC9272 VC9272_contig-8000010, whole genome shotgun sequence (43770 bp)
Overview 1 RT 1: 27228-32671 bp Neighborhood of RT #1 [27228, 32673] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 27228-27581 bp Ori: OOB29650.1 Feature: domain Description: YvlD Location: 27231-27561 bp Feature: domain Description: YvlD Location: 2 72 31-2 7561 bp Feature: gene Location: 27612-28442 bp Ori: OOB29651.1 Feature: domain Description: fadh2 Location: 27630-28434 bp Feature: domain Description: fadh2 Location: 2 7630-2 8434 bp Feature: gene Location: 28915-30312 bp Ori: OOB29652.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29248-29866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 48-2 9866 bp Feature: domain Description: GIIM Note: maturase Location: 29917-30127 bp Feature: domain Description: GIIM Note: maturase Location: 2 9917-3012 7 bp Feature: gene Location: 30422-31900 bp Ori: OOB29665.1 Feature: domain Description: GatA Location: 30449-31877 bp Feature: domain Description: GatA Location: 30449-31877 bp Feature: gene Location: 31981-32673 bp Ori: OOB29653.1 Feature: domain Description: DLH Location: 31993-32671 bp Feature: domain Description: DLH Location: 31993-32 671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)

Seq: MUWR01000076.1 Burkholderia cenocepacia strain VC9272 VC9272_contig-11000005, whole genome shotgun sequence (3565 bp)
Overview 1 RT 1: 1-3320 bp Neighborhood of RT #1 [1, 3478] RVT-GII GIIM Feature: gene Location: 1-1581 bp Feature: gene Location: 1711-2040 bp Feature: gene Location: 2111-3478 bp Ori: OOB36414.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2444-3059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2444-3 059 bp Feature: domain Description: GIIM Note: maturase Location: 3119-3320 bp Feature: domain Description: GIIM Note: maturase Location: 3 119-3 3 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUWR01000166.1 Burkholderia cenocepacia strain VC9272 VC9272_contig-7000012, whole genome shotgun sequence (6117 bp)
Overview 1 RT 1: 1-6116 bp Neighborhood of RT #1 [1, 6117] PRK09413 HATPase_c_3 RVT-UG5 IS285 Feature: gene Location: 1-245 bp Ori: OOB26225.1 Feature: domain Description: PRK09413 Location: 19-244 bp Feature: domain Description: PRK094 13 Location: 19-24 4 bp Feature: gene Location: 392-2407 bp Ori: OOB26223.1 Feature: domain Description: HATPase_c_3 Location: 461-785 bp Feature: domain Description: HATPase_c_3 Location: 4 61-785 bp Feature: gene Location: 2473-5466 bp Ori: OOB26226.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2944-3418 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 294 4 -34 18 bp Feature: gene Location: 5651-6117 bp Ori: OOB26224.1 Feature: domain Description: IS285 Location: 5705-6116 bp Feature: domain Description: IS285 Location: 5705-6116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328)

Seq: MUWR01000069.1 Burkholderia cenocepacia strain VC9272 VC9272_contig-4000005, whole genome shotgun sequence (42565 bp)
Overview 1 RT 1: 33232-41609 bp Neighborhood of RT #1 [33232, 41830] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 33232-34338 bp Ori: OOB37100.1 Feature: domain Description: PRK05643 Location: 33244-34336 bp Feature: domain Description: PRK05 643 Location: 33244-34336 bp Feature: gene Location: 34531-37005 bp Ori: OOB37101.1 Feature: domain Description: gyrB Location: 34561-37003 bp Feature: domain Description: gyrB Location: 345 61-37003 bp Feature: gene Location: 37431-39182 bp Ori: OOB37102.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37566-38208 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 375 66-38208 bp Feature: gene Location: 39277-40998 bp Ori: OOB37103.1 Feature: domain Description: YjgR Location: 39760-40024 bp Feature: domain Description: YjgR Location: 39760-40024 bp Feature: domain Description: YjgR Location: 40519-40921 bp Feature: domain Description: YjgR Location: 405 19-40921 bp Feature: gene Location: 40991-41830 bp Ori: OOB37104.1 Feature: domain Description: SIR2_2 Location: 41165-41609 bp Feature: domain Description: SIR2_2 Location: 41165 -41609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)