myRT

myRT report for GCA_001994435.1_ASM199443v1

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Seq: MUVZ01000041.1 Burkholderia cenocepacia strain VC7933 VC7933_contig-6000003, whole genome shotgun sequence (35616 bp)
Overview 1 RT 1: 7-5291 bp Neighborhood of RT #1 [7, 5305] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Ori: ONZ95085.1 Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3547 Location: 630-1 593 bp Feature: gene Location: 1820-3187 bp Ori: ONZ95086.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 53-2768 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: gene Location: 3307-4272 bp Ori: ONZ95087.1 Feature: domain Description: GDP_MD_SDR_e Location: 3343-4240 bp Feature: domain Description: GDP_MD_SDR_e Location: 3343-4240 bp Feature: gene Location: 4259-5305 bp Ori: ONZ95088.1 Feature: domain Description: Gmd Location: 4274-5291 bp Feature: domain Description: Gmd Location: 4274-5291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MUVZ01000047.1 Burkholderia cenocepacia strain VC7933 VC7933_contig-5, whole genome shotgun sequence (182504 bp)
Overview 1 RT 1: 49185-52934 bp Neighborhood of RT #1 [49185, 53005] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49185-49940 bp Ori: ONZ93853.1 Feature: domain Description: his_ut_repres Location: 49263-49935 bp Feature: domain Description: his_ut_repres Location: 492 63-49935 bp Feature: gene Location: 50175-50747 bp Ori: ONZ93854.1 Feature: domain Description: FIN Location: 50361-50712 bp Feature: domain Description: FIN Location: 50361-50712 bp Feature: gene Location: 51001-52350 bp Ori: ONZ93855.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52 102 bp Feature: gene Location: 52323-52529 bp Feature: gene Location: 52676-53005 bp Ori: ONZ93857.1 Feature: domain Description: Histone_HNS Location: 52697-52934 bp Feature: domain Description: Histone_HNS Location: 52 697-52 934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVZ01000055.1 Burkholderia cenocepacia strain VC7933 VC7933_contig-3000006, whole genome shotgun sequence (19004 bp)
Overview 1 RT 1: 17271-19004 bp Neighborhood of RT #1 [17271, 19004] TnpB_IS66 RVT-GII HTH_Tnp_1 Feature: gene Location: 17271-17603 bp Ori: ONZ92831.1 Feature: domain Description: TnpB_IS66 Location: 17298-17586 bp Feature: domain Description: TnpB_IS66 Location: 17298-17586 bp Feature: gene Location: 17607-17929 bp Feature: gene Location: 17933-18520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18344-18512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 44-18512 bp Feature: gene Location: 18588-18851 bp Ori: ONZ92832.1 Feature: domain Description: HTH_Tnp_1 Location: 18594-18798 bp Feature: domain Description: HTH_Tnp_1 Location: 18594-18798 bp Feature: gene Location: 18848-19004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, HTH_Tnp_1 (pfam01527)

Seq: MUVZ01000060.1 Burkholderia cenocepacia strain VC7933 VC7933_contig-8000006, whole genome shotgun sequence (18801 bp)
Overview 1 RT 1: 3764-9988 bp Neighborhood of RT #1 [3764, 10461] SRAP RVT-GII COG4544 PolY_like Feature: gene Location: 3764-4750 bp Feature: gene Location: 5446-6357 bp Ori: ONZ92496.1 Feature: domain Description: SRAP Location: 5806-6322 bp Feature: domain Description: SRAP Location: 5806-6322 bp Feature: gene Location: 6413-7945 bp Ori: ONZ92497.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6824-7514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6824 -7514 bp Feature: gene Location: 8346-9062 bp Ori: ONZ92498.1 Feature: domain Description: COG4544 Location: 8451-8886 bp Feature: domain Description: COG4 54 4 Location: 84 51-8886 bp Feature: gene Location: 8983-10461 bp Ori: ONZ92499.1 Feature: domain Description: PolY_like Location: 9001-9988 bp Feature: domain Description: PolY_like Location: 9001-9988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII, COG4544 (Uncharacterized conserved protein ), PolY_like (cd03468)

Seq: MUVZ01000131.1 Burkholderia cenocepacia strain VC7933 VC7933_contig-7000014, whole genome shotgun sequence (245794 bp)
Overview 1 RT 1: 104980-109531 bp Neighborhood of RT #1 [104980, 109563] RVT-GII D Feature: gene Location: 104980-105195 bp Feature: gene Location: 105358-105777 bp Feature: gene Location: 106349-107881 bp Ori: ONZ82887.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106760-107450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106760-10745 0 bp Feature: gene Location: 108009-108305 bp Feature: gene Location: 108493-109563 bp Ori: ONZ82889.1 Feature: domain Description: D Location: 108547-109531 bp Feature: domain Description: D Location: 1085 47-1095 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUVZ01000132.1 Burkholderia cenocepacia strain VC7933 VC7933_contig-8000014, whole genome shotgun sequence (1498 bp)
Overview 1 RT 1: 7-1433 bp Neighborhood of RT #1 [7, 1498] PRK14702 RVT-GII rve_3 Feature: gene Location: 7-708 bp Ori: ONZ82798.1 Feature: domain Description: PRK14702 Location: 10-688 bp Feature: domain Description: PRK14702 Location: 10-6 88 bp Feature: gene Location: 700-1089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1045 bp Feature: gene Location: 1139-1498 bp Ori: ONZ82799.1 Feature: domain Description: rve_3 Location: 1235-1433 bp Feature: domain Description: rve_3 Location: 1235-1433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14702 (insertion element IS2 transposase InsD; Provisional), RVT-GII, rve_3 (pfam13683)