myRT

myRT report for GCA_001994445.1_ASM199444v1

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Seq: MUWT01000117.1 Burkholderia cenocepacia strain VC10022 VC10022_contig-5000008, whole genome shotgun sequence (43534 bp)
Overview 1 RT 1: 27372-32815 bp Neighborhood of RT #1 [27372, 32817] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 27372-27725 bp Ori: OOB59884.1 Feature: domain Description: YvlD Location: 27375-27705 bp Feature: domain Description: YvlD Location: 27375-27705 bp Feature: gene Location: 27756-28586 bp Ori: OOB59885.1 Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: domain Description: fadh2 Location: 27774-28578 bp Feature: gene Location: 29059-30456 bp Ori: OOB59886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29392-30010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29392-3001 0 bp Feature: domain Description: GIIM Note: maturase Location: 30061-30271 bp Feature: domain Description: GIIM Note: maturase Location: 30061 -30271 bp Feature: gene Location: 30566-32044 bp Ori: OOB59899.1 Feature: domain Description: GatA Location: 30593-32021 bp Feature: domain Description: GatA Location: 30593-32021 bp Feature: gene Location: 32125-32817 bp Ori: OOB59887.1 Feature: domain Description: DLH Location: 32137-32815 bp Feature: domain Description: DLH Location: 321 37-3281 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)

Seq: MUWT01000087.1 Burkholderia cenocepacia strain VC10022 VC10022_contig-15000005, whole genome shotgun sequence (97859 bp)
Overview 1 RT 1: 1-4754 bp Neighborhood of RT #1 [1, 4754] RVT-GII GIIM Feature: gene Location: 1-1309 bp Ori: OOB63135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1009-12 10 bp Feature: gene Location: 1380-1709 bp Feature: gene Location: 1839-4754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUWT01000217.1 Burkholderia cenocepacia strain VC10022 VC10022_contig-11000014, whole genome shotgun sequence (1371 bp)
Overview 1 RT 1: 1-1370 bp Neighborhood of RT #1 [1, 1371] IS285 RVT-UG5 PRK09413 Feature: gene Location: 1-405 bp Ori: OOB49817.1 Feature: domain Description: IS285 Location: 13-391 bp Feature: domain Description: IS285 Location: 13 -3 91 bp Feature: gene Location: 599-1189 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 608-1082 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 608-1082 bp Feature: gene Location: 1247-1371 bp Ori: OOB49818.1 Feature: domain Description: PRK09413 Location: 1292-1370 bp Feature: domain Description: PRK09413 Location: 1292-13 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-UG5, PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: MUWT01000098.1 Burkholderia cenocepacia strain VC10022 VC10022_contig-9000006, whole genome shotgun sequence (261758 bp)
Overview 1 RT 1: 146297-150112 bp Neighborhood of RT #1 [146297, 150117] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 146297-146626 bp Ori: OOB61877.1 Feature: domain Description: Histone_HNS Location: 146318-146555 bp Feature: domain Description: Histone_HNS Location: 14 6318-14 6555 bp Feature: gene Location: 146773-146979 bp Feature: gene Location: 146952-148301 bp Ori: OOB61879.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147417-148053 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 74 17-14 8053 bp Feature: gene Location: 148555-149127 bp Ori: OOB61880.1 Feature: domain Description: FIN Location: 148741-149092 bp Feature: domain Description: FIN Location: 14 874 1-14 9092 bp Feature: gene Location: 149362-150117 bp Ori: OOB61881.1 Feature: domain Description: his_ut_repres Location: 149440-150112 bp Feature: domain Description: his_ut_repres Location: 14 94 4 0-150112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWT01000063.1 Burkholderia cenocepacia strain VC10022 VC10022_contig-2000004, whole genome shotgun sequence (119371 bp)
Overview 1 RT 1: 109535-117912 bp Neighborhood of RT #1 [109535, 118133] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 109535-110641 bp Ori: OOB65649.1 Feature: domain Description: PRK05643 Location: 109547-110639 bp Feature: domain Description: PRK05 643 Location: 1095 47-110639 bp Feature: gene Location: 110834-113308 bp Ori: OOB65650.1 Feature: domain Description: gyrB Location: 110864-113306 bp Feature: domain Description: gyrB Location: 110864-113306 bp Feature: gene Location: 113734-115485 bp Ori: OOB65651.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113869-114511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113869-1145 11 bp Feature: gene Location: 115580-117301 bp Ori: OOB65652.1 Feature: domain Description: YjgR Location: 116063-116327 bp Feature: domain Description: YjgR Location: 116063-116327 bp Feature: domain Description: YjgR Location: 116822-117224 bp Feature: domain Description: YjgR Location: 116822-117224 bp Feature: gene Location: 117294-118133 bp Ori: OOB65653.1 Feature: domain Description: SIR2_2 Location: 117468-117912 bp Feature: domain Description: SIR2_2 Location: 117468-117912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)