myRT

myRT report for GCA_001994475.1_ASM199447v1

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Seq: MUWW01000150.1 Burkholderia cenocepacia strain VC10425 VC10425_contig-6000010, whole genome shotgun sequence (11927 bp)
Overview 1 RT 1: 1-6667 bp Neighborhood of RT #1 [1, 6667] IS285 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-467 bp Ori: OOB50516.1 Feature: domain Description: IS285 Location: 55-466 bp Feature: domain Description: IS285 Location: 55-466 bp Feature: gene Location: 652-3645 bp Ori: OOB50522.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-1597 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 1 23-1 597 bp Feature: gene Location: 3711-5726 bp Ori: OOB50517.1 Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: domain Description: HATPase_c_3 Location: 3780-41 04 bp Feature: gene Location: 5978-6667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUWW01000072.1 Burkholderia cenocepacia strain VC10425 VC10425_contig-12000004, whole genome shotgun sequence (139713 bp)
Overview 1 RT 1: 1-2343 bp 2 RT 2: 12088-17513 bp Neighborhood of RT #1 [1, 2378] RVT-GII GIIM RlpA Neighborhood of RT #2 [12088, 17533] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 1-1309 bp Ori: OOB59468.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1009-12 10 bp Feature: gene Location: 1380-1709 bp Feature: gene Location: 1767-2378 bp Ori: OOB59345.1 Feature: domain Description: RlpA Location: 1839-2343 bp Feature: domain Description: RlpA Location: 1839-2 343 bp Feature: gene Location: 12088-12780 bp Ori: OOB59353.1 Feature: domain Description: DLH Location: 12100-12778 bp Feature: domain Description: DLH Location: 12 100-12 778 bp Feature: gene Location: 12861-14339 bp Ori: OOB59471.1 Feature: domain Description: GatA Location: 12888-14316 bp Feature: domain Description: GatA Location: 12 888-14316 bp Feature: gene Location: 14449-15846 bp Ori: OOB59354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14782-15400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14782 -15400 bp Feature: domain Description: GIIM Note: maturase Location: 15451-15661 bp Feature: domain Description: GIIM Note: maturase Location: 15451-15661 bp Feature: gene Location: 16319-17149 bp Ori: OOB59355.1 Feature: domain Description: fadh2 Location: 16337-17141 bp Feature: domain Description: fadh2 Location: 16337-17141 bp Feature: gene Location: 17180-17533 bp Ori: OOB59356.1 Feature: domain Description: YvlD Location: 17183-17513 bp Feature: domain Description: YvlD Location: 17183-17513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RlpA (COG0797), DLH (pfam01738), GatA (COG0154), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWW01000061.1 Burkholderia cenocepacia strain VC10425 VC10425_contig-1000004, whole genome shotgun sequence (119388 bp)
Overview 1 RT 1: 109552-117929 bp Neighborhood of RT #1 [109552, 118150] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 109552-110658 bp Ori: OOB60616.1 Feature: domain Description: PRK05643 Location: 109564-110656 bp Feature: domain Description: PRK05643 Location: 109564-110656 bp Feature: gene Location: 110851-113325 bp Ori: OOB60617.1 Feature: domain Description: gyrB Location: 110881-113323 bp Feature: domain Description: gyrB Location: 110881-113 3 23 bp Feature: gene Location: 113751-115502 bp Ori: OOB60618.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113886-114528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113 886-114528 bp Feature: gene Location: 115597-117318 bp Ori: OOB60619.1 Feature: domain Description: YjgR Location: 116080-116344 bp Feature: domain Description: YjgR Location: 116080-1163 44 bp Feature: domain Description: YjgR Location: 116839-117241 bp Feature: domain Description: YjgR Location: 11683 9-117241 bp Feature: gene Location: 117311-118150 bp Ori: OOB60620.1 Feature: domain Description: SIR2_2 Location: 117485-117929 bp Feature: domain Description: SIR2_2 Location: 117485-117929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWW01000083.1 Burkholderia cenocepacia strain VC10425 VC10425_contig-1000006, whole genome shotgun sequence (140889 bp)
Overview 1 RT 1: 125546-129361 bp Neighborhood of RT #1 [125546, 129366] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125546-125875 bp Ori: OOB57915.1 Feature: domain Description: Histone_HNS Location: 125567-125804 bp Feature: domain Description: Histone_HNS Location: 125567-125804 bp Feature: gene Location: 126022-126228 bp Feature: gene Location: 126201-127550 bp Ori: OOB57917.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126666-127302 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126666-127302 bp Feature: gene Location: 127804-128376 bp Ori: OOB57918.1 Feature: domain Description: FIN Location: 127990-128341 bp Feature: domain Description: FIN Location: 127990-12834 1 bp Feature: gene Location: 128611-129366 bp Ori: OOB57919.1 Feature: domain Description: his_ut_repres Location: 128689-129361 bp Feature: domain Description: his_ut_repres Location: 128689-129361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)