myRT

myRT report for GCA_001994495.1_ASM199449v1

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Seq: MUWU01000136.1 Burkholderia cenocepacia strain VC10023 VC10023_contig-8000010, whole genome shotgun sequence (1465 bp)
Overview 1 RT 1: 1-1465 bp Neighborhood of RT #1 [1, 1465] PRK09413 RVT-UG5 Feature: gene Location: 1-227 bp Ori: OOB69180.1 Feature: domain Description: PRK09413 Location: 55-226 bp Feature: domain Description: PRK0941 3 Location: 55-226 bp Feature: gene Location: 285-875 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 294-768 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 294-768 bp Feature: gene Location: 1069-1465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-UG5

Seq: MUWU01000128.1 Burkholderia cenocepacia strain VC10023 VC10023_contig-10, whole genome shotgun sequence (119370 bp)
Overview 1 RT 1: 1239-9835 bp Neighborhood of RT #1 [1239, 9837] SIR2_2 YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 1239-2078 bp Ori: OOB69581.1 Feature: domain Description: SIR2_2 Location: 1413-1857 bp Feature: domain Description: SIR2 _2 Location: 1413-1857 bp Feature: gene Location: 2071-3792 bp Ori: OOB69582.1 Feature: domain Description: YjgR Location: 2554-2818 bp Feature: domain Description: YjgR Location: 2 554-2 818 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: gene Location: 3887-5638 bp Ori: OOB69583.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4022-4664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 402 2 -4664 bp Feature: gene Location: 6064-8538 bp Ori: OOB69584.1 Feature: domain Description: gyrB Location: 6094-8536 bp Feature: domain Description: gyrB Location: 6094-8536 bp Feature: gene Location: 8731-9837 bp Ori: OOB69585.1 Feature: domain Description: PRK05643 Location: 8743-9835 bp Feature: domain Description: PRK05643 Location: 8743-9835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-Retrons, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated)

Seq: MUWU01000087.1 Burkholderia cenocepacia strain VC10023 VC10023_contig-11000006, whole genome shotgun sequence (70025 bp)
Overview 1 RT 1: 1-2301 bp 2 RT 2: 12046-17471 bp Neighborhood of RT #1 [1, 2336] RVT-GII GIIM RlpA Neighborhood of RT #2 [12046, 17491] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 1-1267 bp Ori: OOB71298.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 4-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: gene Location: 1338-1667 bp Feature: gene Location: 1725-2336 bp Ori: OOB71240.1 Feature: domain Description: RlpA Location: 1797-2301 bp Feature: domain Description: RlpA Location: 1797-23 01 bp Feature: gene Location: 12046-12738 bp Ori: OOB71248.1 Feature: domain Description: DLH Location: 12058-12736 bp Feature: domain Description: DLH Location: 12058-1273 6 bp Feature: gene Location: 12819-14297 bp Ori: OOB71301.1 Feature: domain Description: GatA Location: 12846-14274 bp Feature: domain Description: GatA Location: 12846-14274 bp Feature: gene Location: 14407-15804 bp Ori: OOB71249.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14740-15358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14740-153 58 bp Feature: domain Description: GIIM Note: maturase Location: 15409-15619 bp Feature: domain Description: GIIM Note: maturase Location: 15409-15619 bp Feature: gene Location: 16277-17107 bp Ori: OOB71250.1 Feature: domain Description: fadh2 Location: 16295-17099 bp Feature: domain Description: fadh2 Location: 16295-17099 bp Feature: gene Location: 17138-17491 bp Ori: OOB71251.1 Feature: domain Description: YvlD Location: 17141-17471 bp Feature: domain Description: YvlD Location: 17141-17471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RlpA (COG0797), DLH (pfam01738), GatA (COG0154), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWU01000137.1 Burkholderia cenocepacia strain VC10023 VC10023_contig-10000010, whole genome shotgun sequence (271917 bp)
Overview 1 RT 1: 111634-115383 bp Neighborhood of RT #1 [111634, 115454] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 111634-112389 bp Ori: OOB68973.1 Feature: domain Description: his_ut_repres Location: 111712-112384 bp Feature: domain Description: his_ut_repres Location: 111712-112384 bp Feature: gene Location: 112624-113196 bp Ori: OOB68974.1 Feature: domain Description: FIN Location: 112810-113161 bp Feature: domain Description: FIN Location: 112810-113161 bp Feature: gene Location: 113450-114799 bp Ori: OOB68975.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113915-114551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113915-114 551 bp Feature: gene Location: 114772-114978 bp Feature: gene Location: 115125-115454 bp Ori: OOB68977.1 Feature: domain Description: Histone_HNS Location: 115146-115383 bp Feature: domain Description: Histone_HNS Location: 11514 6-115383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)