myRT

myRT report for GCA_001994505.1_ASM199450v1

Download annotations/find similar RTs

Seq: MUWV01000129.1 Burkholderia cenocepacia strain VC10414 VC10414_contig-10, whole genome shotgun sequence (119382 bp)
Overview 1 RT 1: 1239-9835 bp Neighborhood of RT #1 [1239, 9837] SIR2_2 YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 1239-2078 bp Ori: OOB33816.1 Feature: domain Description: SIR2_2 Location: 1413-1857 bp Feature: domain Description: SIR2_2 Location: 1 41 3-1 857 bp Feature: gene Location: 2071-3792 bp Ori: OOB33817.1 Feature: domain Description: YjgR Location: 2554-2818 bp Feature: domain Description: YjgR Location: 2554-281 8 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: domain Description: YjgR Location: 331 3-371 5 bp Feature: gene Location: 3887-5638 bp Ori: OOB33818.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4022-4664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4022-4664 bp Feature: gene Location: 6064-8538 bp Ori: OOB33819.1 Feature: domain Description: gyrB Location: 6094-8536 bp Feature: domain Description: gyrB Location: 6094-8536 bp Feature: gene Location: 8731-9837 bp Ori: OOB33820.1 Feature: domain Description: PRK05643 Location: 8743-9835 bp Feature: domain Description: PRK05643 Location: 8743-9835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-Retrons, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated)

Seq: MUWV01000017.1 Burkholderia cenocepacia strain VC10414 VC10414_contig-6000001, whole genome shotgun sequence (43390 bp)
Overview 1 RT 1: 27228-32671 bp Neighborhood of RT #1 [27228, 32673] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 27228-27581 bp Ori: OOB45670.1 Feature: domain Description: YvlD Location: 27231-27561 bp Feature: domain Description: YvlD Location: 2 72 31-2 7561 bp Feature: gene Location: 27612-28442 bp Ori: OOB45671.1 Feature: domain Description: fadh2 Location: 27630-28434 bp Feature: domain Description: fadh2 Location: 2 7630-2 8434 bp Feature: gene Location: 28915-30312 bp Ori: OOB45672.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29248-29866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 48-2 9866 bp Feature: domain Description: GIIM Note: maturase Location: 29917-30127 bp Feature: domain Description: GIIM Note: maturase Location: 2 9917-3012 7 bp Feature: gene Location: 30422-31900 bp Ori: OOB45685.1 Feature: domain Description: GatA Location: 30449-31877 bp Feature: domain Description: GatA Location: 30449-31877 bp Feature: gene Location: 31981-32673 bp Ori: OOB45673.1 Feature: domain Description: DLH Location: 31993-32671 bp Feature: domain Description: DLH Location: 31993-32 671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)

Seq: MUWV01000032.1 Burkholderia cenocepacia strain VC10414 VC10414_contig-5000002, whole genome shotgun sequence (171617 bp)
Overview 1 RT 1: 156418-160233 bp Neighborhood of RT #1 [156418, 160238] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 156418-156747 bp Ori: OOB44238.1 Feature: domain Description: Histone_HNS Location: 156439-156676 bp Feature: domain Description: Histone_HNS Location: 15643 9-156676 bp Feature: gene Location: 156894-157100 bp Feature: gene Location: 157073-158422 bp Ori: OOB44240.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 157538-158174 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15753 8-158174 bp Feature: gene Location: 158676-159248 bp Ori: OOB44241.1 Feature: domain Description: FIN Location: 158862-159213 bp Feature: domain Description: FIN Location: 158862-159213 bp Feature: gene Location: 159483-160238 bp Ori: OOB44242.1 Feature: domain Description: his_ut_repres Location: 159561-160233 bp Feature: domain Description: his_ut_repres Location: 159561-16023 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWV01000058.1 Burkholderia cenocepacia strain VC10414 VC10414_contig-7000004, whole genome shotgun sequence (11877 bp)
Overview 1 RT 1: 1-6667 bp Neighborhood of RT #1 [1, 6667] IS285 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-467 bp Ori: OOB41510.1 Feature: domain Description: IS285 Location: 55-466 bp Feature: domain Description: IS285 Location: 55-4 66 bp Feature: gene Location: 652-3645 bp Ori: OOB41516.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-1597 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-1597 bp Feature: gene Location: 3711-5726 bp Ori: OOB41511.1 Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: domain Description: HATPase_c_3 Location: 3780-4 104 bp Feature: gene Location: 5978-6667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUWV01000153.1 Burkholderia cenocepacia strain VC10414 VC10414_contig-14000011, whole genome shotgun sequence (5918 bp)
Overview 1 RT 1: 1-2301 bp Neighborhood of RT #1 [1, 2336] RVT-GII GIIM RlpA Feature: gene Location: 1-1267 bp Ori: OOB31108.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: gene Location: 1338-1667 bp Feature: gene Location: 1725-2336 bp Ori: OOB31105.1 Feature: domain Description: RlpA Location: 1797-2301 bp Feature: domain Description: RlpA Location: 1797-2301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RlpA (COG0797)