myRT

myRT report for GCA_001994535.1_ASM199453v1

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Seq: MUPY01000048.1 Burkholderia cenocepacia strain VC5279 VC5279_contig-4000005, whole genome shotgun sequence (42005 bp)
Overview 1 RT 1: 1439-6047 bp Neighborhood of RT #1 [1439, 6055] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 1439-1633 bp Feature: gene Location: 2013-3047 bp Ori: ONO12894.1 Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: gene Location: 3218-4585 bp Ori: ONO12895.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551 -41 66 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: gene Location: 4693-5580 bp Ori: ONO12896.1 Feature: domain Description: RsmI Location: 4741-5554 bp Feature: domain Description: RsmI Location: 4741 -5554 bp Feature: gene Location: 5579-6055 bp Ori: ONO12897.1 Feature: domain Description: PRK14673 Location: 5630-6047 bp Feature: domain Description: PRK1 4673 Location: 5630-6047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUPY01000062.1 Burkholderia cenocepacia strain VC5279 VC5279_contig-1000007, whole genome shotgun sequence (69128 bp)
Overview 1 RT 1: 65364-69063 bp Neighborhood of RT #1 [65364, 69119] PRK12511 COG4315 RVT-GII GIIM COG3547 Feature: gene Location: 65364-65879 bp Ori: ONO10484.1 Feature: domain Description: PRK12511 Location: 65376-65871 bp Feature: domain Description: PRK12 511 Location: 65376-65871 bp Feature: gene Location: 65907-66266 bp Ori: ONO10485.1 Feature: domain Description: COG4315 Location: 65928-66264 bp Feature: domain Description: COG4315 Location: 6592 8-662 64 bp Feature: gene Location: 66547-67914 bp Ori: ONO10486.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66880-67495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66880-67495 bp Feature: domain Description: GIIM Note: maturase Location: 67555-67756 bp Feature: domain Description: GIIM Note: maturase Location: 67555-67756 bp Feature: gene Location: 68085-69119 bp Ori: ONO10487.1 Feature: domain Description: COG3547 Location: 68100-69063 bp Feature: domain Description: COG3547 Location: 68100-69063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUPY01000002.1 Burkholderia cenocepacia strain VC5279 VC5279_contig-1000000, whole genome shotgun sequence (306571 bp)
Overview 1 RT 1: 29448-33837 bp Neighborhood of RT #1 [29448, 33860] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29448-29708 bp Feature: gene Location: 29723-31624 bp Ori: ONO21102.1 Feature: domain Description: Dcm Location: 29756-30362 bp Feature: domain Description: Dcm Location: 29756-3 03 62 bp Feature: domain Description: Dcm Location: 31361-31520 bp Feature: domain Description: Dcm Location: 3 13 61-3 1520 bp Feature: gene Location: 31683-32681 bp Ori: ONO20869.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 1776-3 2463 bp Feature: gene Location: 33025-33381 bp Ori: ONO20870.1 Feature: domain Description: Avd_like Location: 33052-33358 bp Feature: domain Description: Avd_like Location: 3 3 052-3 3 3 58 bp Feature: gene Location: 33396-33860 bp Ori: ONO20871.1 Feature: domain Description: DUF1566 Location: 33657-33837 bp Feature: domain Description: DUF1566 Location: 3 3 657-3 3 83 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUPY01000082.1 Burkholderia cenocepacia strain VC5279 VC5279_contig-3000010, whole genome shotgun sequence (42894 bp)
Overview 1 RT 1: 34755-41728 bp Neighborhood of RT #1 [34755, 41775] DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 34755-35060 bp Feature: gene Location: 35197-36252 bp Ori: ONO06817.1 Feature: domain Description: DEXHc_Snf Location: 35416-35671 bp Feature: domain Description: DEXHc_Snf Location: 354 16-35671 bp Feature: gene Location: 36848-37918 bp Feature: domain Description: RVT_N Location: 36905-37142 bp Feature: domain Description: RVT_N Location: 36905-3714 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37193-37844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37193-3784 4 bp Feature: gene Location: 38049-40964 bp Ori: ONO06818.1 Feature: domain Description: DUF4158 Location: 38088-38553 bp Feature: domain Description: DUF4 158 Location: 38088-38553 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 39741-40887 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3974 1-4 0887 bp Feature: gene Location: 41110-41775 bp Feature: domain Description: GIIM Note: maturase Location: 41113-41338 bp Feature: domain Description: GIIM Note: maturase Location: 4 1113-4 1338 bp Feature: domain Description: HNHc Note: nucleases Location: 41572-41728 bp Feature: domain Description: HNHc Note: nucleases Location: 4 1572-4 1728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUPY01000035.1 Burkholderia cenocepacia strain VC5279 VC5279_contig-2000004, whole genome shotgun sequence (46836 bp)
Overview 1 RT 1: 1-5395 bp Neighborhood of RT #1 [1, 5395] rve_3 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-408 bp Ori: ONO15026.1 Feature: domain Description: rve_3 Location: 145-343 bp Feature: domain Description: rve_3 Location: 145 -343 bp Feature: gene Location: 457-1911 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 466-940 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 466-940 bp Feature: gene Location: 2439-4454 bp Ori: ONO15027.1 Feature: domain Description: HATPase_c_3 Location: 2508-2832 bp Feature: domain Description: HATPase_c_3 Location: 25 08-2832 bp Feature: gene Location: 4706-5395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUPY01000011.1 Burkholderia cenocepacia strain VC5279 VC5279_contig-3000001, whole genome shotgun sequence (141329 bp)
Overview 1 RT 1: 125549-129364 bp Neighborhood of RT #1 [125549, 129369] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125549-125878 bp Ori: ONO19415.1 Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: gene Location: 126025-126231 bp Feature: gene Location: 126204-127553 bp Ori: ONO19417.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126669-127305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126 6 6 9-127305 bp Feature: gene Location: 127807-128379 bp Ori: ONO19418.1 Feature: domain Description: FIN Location: 127993-128344 bp Feature: domain Description: FIN Location: 127993-128344 bp Feature: gene Location: 128614-129369 bp Ori: ONO19419.1 Feature: domain Description: his_ut_repres Location: 128692-129364 bp Feature: domain Description: his_ut_repres Location: 1286 92-12936 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)