myRT

myRT report for GCA_001994545.1_ASM199454v1

Download annotations/find similar RTs

Seq: MUPS01000047.1 Burkholderia cenocepacia strain VC2386 VC2386_contig-7000005, whole genome shotgun sequence (47955 bp)
Overview 1 RT 1: 3188-7796 bp Neighborhood of RT #1 [3188, 7804] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 3188-3382 bp Feature: gene Location: 3762-4796 bp Ori: ONN90671.1 Feature: domain Description: COG3547 Location: 3777-4740 bp Feature: domain Description: COG3547 Location: 3777-4740 bp Feature: gene Location: 4967-6334 bp Ori: ONN90672.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-5915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-591 5 bp Feature: domain Description: GIIM Note: maturase Location: 5975-6176 bp Feature: domain Description: GIIM Note: maturase Location: 5975-61 76 bp Feature: gene Location: 6442-7329 bp Ori: ONN90673.1 Feature: domain Description: RsmI Location: 6490-7303 bp Feature: domain Description: RsmI Location: 6490-7303 bp Feature: gene Location: 7328-7804 bp Ori: ONN90674.1 Feature: domain Description: PRK14673 Location: 7379-7796 bp Feature: domain Description: PRK1 4673 Location: 7379-7796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUPS01000060.1 Burkholderia cenocepacia strain VC2386 VC2386_contig-5000008, whole genome shotgun sequence (41856 bp)
Overview 1 RT 1: 146-6355 bp Neighborhood of RT #1 [146, 6355] DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 146-3061 bp Ori: ONN87392.1 Feature: domain Description: DUF4158 Location: 185-650 bp Feature: domain Description: DUF4158 Location: 185-650 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1838-2984 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1838-2 984 bp Feature: gene Location: 3192-4262 bp Feature: domain Description: RVT_N Location: 3249-3486 bp Feature: domain Description: RVT_N Location: 32 49-3486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3537-4188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3537-4188 bp Feature: gene Location: 4858-5913 bp Ori: ONN87393.1 Feature: domain Description: DEXHc_Snf Location: 5077-5332 bp Feature: domain Description: DEXHc_Snf Location: 5077-5332 bp Feature: gene Location: 6050-6355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUPS01000033.1 Burkholderia cenocepacia strain VC2386 VC2386_contig-1000004, whole genome shotgun sequence (46869 bp)
Overview 1 RT 1: 1-5428 bp Neighborhood of RT #1 [1, 5428] Tra5 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-441 bp Ori: ONN93030.1 Feature: domain Description: Tra5 Location: 4-409 bp Feature: domain Description: Tra5 Location: 4-409 bp Feature: gene Location: 490-1944 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 499-973 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 499-973 bp Feature: gene Location: 2472-4487 bp Ori: ONN93031.1 Feature: domain Description: HATPase_c_3 Location: 2541-2865 bp Feature: domain Description: HATPase_c_3 Location: 2541-2865 bp Feature: gene Location: 4739-5428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUPS01000056.1 Burkholderia cenocepacia strain VC2386 VC2386_contig-1000008, whole genome shotgun sequence (38486 bp)
Overview 1 RT 1: 1-1955 bp Neighborhood of RT #1 [1, 1963] RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 1-780 bp Ori: ONN88309.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-361 bp Feature: domain Description: GIIM Note: maturase Location: 421-622 bp Feature: domain Description: GIIM Note: maturase Location: 4 21-622 bp Feature: gene Location: 1061-1420 bp Ori: ONN88310.1 Feature: domain Description: COG4315 Location: 1082-1418 bp Feature: domain Description: COG4 315 Location: 1082-14 18 bp Feature: gene Location: 1448-1963 bp Ori: ONN88311.1 Feature: domain Description: PRK12511 Location: 1460-1955 bp Feature: domain Description: PRK12511 Location: 14 60-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)

Seq: MUPS01000026.1 Burkholderia cenocepacia strain VC2386 VC2386_contig-2000003, whole genome shotgun sequence (141329 bp)
Overview 1 RT 1: 11961-15710 bp Neighborhood of RT #1 [11961, 15781] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11961-12716 bp Ori: ONN94225.1 Feature: domain Description: his_ut_repres Location: 12039-12711 bp Feature: domain Description: his_ut_repres Location: 12039-12711 bp Feature: gene Location: 12951-13523 bp Ori: ONN94226.1 Feature: domain Description: FIN Location: 13137-13488 bp Feature: domain Description: FIN Location: 13137-13488 bp Feature: gene Location: 13777-15126 bp Ori: ONN94227.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14242-14878 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14242-14878 bp Feature: gene Location: 15099-15305 bp Feature: gene Location: 15452-15781 bp Ori: ONN94229.1 Feature: domain Description: Histone_HNS Location: 15473-15710 bp Feature: domain Description: Histone_HNS Location: 15 473-15 710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)