myRT

myRT report for GCA_001994555.1_ASM199455v1

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Seq: MUPU01000010.1 Burkholderia cenocepacia strain VC2449 VC2449_contig-9000000, whole genome shotgun sequence (143320 bp)
Overview 1 RT 1: 109788-114200 bp Neighborhood of RT #1 [109788, 114200] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 109788-110252 bp Ori: ONO38226.1 Feature: domain Description: DUF1566 Location: 110049-110229 bp Feature: domain Description: DUF1 566 Location: 1 1 0049-1 1 0229 bp Feature: gene Location: 110267-110623 bp Ori: ONO38227.1 Feature: domain Description: Avd_like Location: 110294-110600 bp Feature: domain Description: Avd_like Location: 1 1 0294-1 1 0600 bp Feature: gene Location: 110967-111965 bp Ori: ONO38228.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111060-111747 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 1 060-1 1 1 747 bp Feature: gene Location: 112024-113925 bp Ori: ONO38272.1 Feature: domain Description: Dcm Location: 112057-112663 bp Feature: domain Description: Dcm Location: 1 1 2057-1 1 2663 bp Feature: domain Description: Dcm Location: 113662-113821 bp Feature: domain Description: Dcm Location: 1 1 3662-1 1 3821 bp Feature: gene Location: 113940-114200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUPU01000109.1 Burkholderia cenocepacia strain VC2449 VC2449_contig-1000013, whole genome shotgun sequence (95564 bp)
Overview 1 RT 1: 90170-95499 bp Neighborhood of RT #1 [90170, 95564] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 90170-90859 bp Feature: gene Location: 91111-93126 bp Ori: ONO21949.1 Feature: domain Description: HATPase_c_3 Location: 91180-91504 bp Feature: domain Description: HATPase_c_3 Location: 91180-91504 bp Feature: gene Location: 93654-95108 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93663-94137 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93663-94137 bp Feature: gene Location: 95157-95564 bp Ori: ONO21962.1 Feature: domain Description: rve_3 Location: 95301-95499 bp Feature: domain Description: rve_3 Location: 95301-95499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUPU01000091.1 Burkholderia cenocepacia strain VC2449 VC2449_contig-9000010, whole genome shotgun sequence (382091 bp)
Overview 1 RT 1: 127045-130794 bp Neighborhood of RT #1 [127045, 130865] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 127045-127800 bp Ori: ONO25025.1 Feature: domain Description: his_ut_repres Location: 127123-127795 bp Feature: domain Description: his_ut_repres Location: 127123 -127795 bp Feature: gene Location: 128035-128607 bp Ori: ONO25026.1 Feature: domain Description: FIN Location: 128221-128572 bp Feature: domain Description: FIN Location: 128221-128572 bp Feature: gene Location: 128861-130210 bp Ori: ONO25027.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129326-129962 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1293 26-129962 bp Feature: gene Location: 130183-130389 bp Feature: gene Location: 130536-130865 bp Ori: ONO25029.1 Feature: domain Description: Histone_HNS Location: 130557-130794 bp Feature: domain Description: Histone_HNS Location: 13 0557-13 0794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUPU01000085.1 Burkholderia cenocepacia strain VC2449 VC2449_contig-3000010, whole genome shotgun sequence (41052 bp)
Overview 1 RT 1: 35676-41052 bp Neighborhood of RT #1 [35676, 41052] DEXHc_Snf RVT_N RVT-GII Feature: gene Location: 35676-35981 bp Feature: gene Location: 36118-37173 bp Ori: ONO25559.1 Feature: domain Description: DEXHc_Snf Location: 36337-36592 bp Feature: domain Description: DEXHc_Snf Location: 36337-36592 bp Feature: gene Location: 37769-38839 bp Feature: domain Description: RVT_N Location: 37826-38063 bp Feature: domain Description: RVT_N Location: 37826-38063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38114-38765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38114 -38765 bp Feature: gene Location: 38970-41052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII

Seq: MUPU01000117.1 Burkholderia cenocepacia strain VC2449 VC2449_contig-9000013, whole genome shotgun sequence (9440 bp)
Overview 1 RT 1: 1983-6599 bp Neighborhood of RT #1 [1983, 6599] PRK14673 RsmI RVT-GII GIIM COG3547 Feature: gene Location: 1983-2459 bp Ori: ONO20743.1 Feature: domain Description: PRK14673 Location: 2034-2451 bp Feature: domain Description: PRK14673 Location: 2034-245 1 bp Feature: gene Location: 2458-3345 bp Ori: ONO20744.1 Feature: domain Description: RsmI Location: 2506-3319 bp Feature: domain Description: RsmI Location: 25 06-3319 bp Feature: gene Location: 3453-4820 bp Ori: ONO20745.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3786-4401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3786-4401 bp Feature: domain Description: GIIM Note: maturase Location: 4461-4662 bp Feature: domain Description: GIIM Note: maturase Location: 4461-4662 bp Feature: gene Location: 4991-6025 bp Ori: ONO20746.1 Feature: domain Description: COG3547 Location: 5006-5969 bp Feature: domain Description: COG35 47 Location: 5 006-5 969 bp Feature: gene Location: 6405-6599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )