myRT

myRT report for GCA_001994595.1_ASM199459v1

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Seq: MUQK01000106.1 Burkholderia cenocepacia strain VC9040 VC9040_contig-1000012, whole genome shotgun sequence (277777 bp)
Overview 1 RT 1: 11961-15710 bp Neighborhood of RT #1 [11961, 15781] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11961-12716 bp Ori: ONP09136.1 Feature: domain Description: his_ut_repres Location: 12039-12711 bp Feature: domain Description: his_ut_repres Location: 1 2039-1 271 1 bp Feature: gene Location: 12951-13523 bp Ori: ONP09137.1 Feature: domain Description: FIN Location: 13137-13488 bp Feature: domain Description: FIN Location: 1 31 37-1 3488 bp Feature: gene Location: 13777-15126 bp Ori: ONP09138.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14242-14878 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4242-1 4878 bp Feature: gene Location: 15099-15305 bp Feature: gene Location: 15452-15781 bp Ori: ONP09140.1 Feature: domain Description: Histone_HNS Location: 15473-15710 bp Feature: domain Description: Histone_HNS Location: 1 5473-1 571 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUQK01000110.1 Burkholderia cenocepacia strain VC9040 VC9040_contig-13, whole genome shotgun sequence (95527 bp)
Overview 1 RT 1: 90185-95527 bp Neighborhood of RT #1 [90185, 95527] HATPase_c_3 RVT-UG5 Feature: gene Location: 90185-90874 bp Feature: gene Location: 91126-93141 bp Ori: ONP08372.1 Feature: domain Description: HATPase_c_3 Location: 91195-91519 bp Feature: domain Description: HATPase_c_3 Location: 91195-91519 bp Feature: gene Location: 93669-95123 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93678-94152 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93678-94152 bp Feature: gene Location: 95172-95527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5

Seq: MUQK01000041.1 Burkholderia cenocepacia strain VC9040 VC9040_contig-5, whole genome shotgun sequence (69884 bp)
Overview 1 RT 1: 155-4590 bp Neighborhood of RT #1 [155, 4631] RVT-GII GIIM RpiR PRK09054 Feature: gene Location: 155-1522 bp Ori: ONP20134.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-1103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-1103 bp Feature: domain Description: GIIM Note: maturase Location: 1163-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1163 -13 64 bp Feature: gene Location: 1632-2480 bp Ori: ONP20135.1 Feature: domain Description: RpiR Location: 1635-2457 bp Feature: domain Description: RpiR Location: 163 5-2457 bp Feature: gene Location: 2775-4631 bp Ori: ONP20136.1 Feature: domain Description: PRK09054 Location: 2787-4590 bp Feature: domain Description: PRK09054 Location: 2787-4590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RpiR (COG1737), PRK09054 (phosphogluconate dehydratase; Validated)

Seq: MUQK01000001.1 Burkholderia cenocepacia strain VC9040 VC9040_contig-0, whole genome shotgun sequence (232159 bp)
Overview 1 RT 1: 29448-33837 bp Neighborhood of RT #1 [29448, 33860] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29448-29708 bp Feature: gene Location: 29723-31624 bp Ori: ONP25834.1 Feature: domain Description: Dcm Location: 29756-30362 bp Feature: domain Description: Dcm Location: 29756-30362 bp Feature: domain Description: Dcm Location: 31361-31520 bp Feature: domain Description: Dcm Location: 31361-31520 bp Feature: gene Location: 31683-32681 bp Ori: ONP25835.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-324 63 bp Feature: gene Location: 33025-33381 bp Ori: ONP25836.1 Feature: domain Description: Avd_like Location: 33052-33358 bp Feature: domain Description: Avd_like Location: 33052-33358 bp Feature: gene Location: 33396-33860 bp Ori: ONP25837.1 Feature: domain Description: DUF1566 Location: 33657-33837 bp Feature: domain Description: DUF1566 Location: 33657-33837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUQK01000101.1 Burkholderia cenocepacia strain VC9040 VC9040_contig-7000011, whole genome shotgun sequence (10122 bp)
Overview 1 RT 1: 2179-9199 bp Neighborhood of RT #1 [2179, 9199] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 2179-2844 bp Feature: domain Description: GIIM Note: maturase Location: 2182-2407 bp Feature: domain Description: GIIM Note: maturase Location: 2182-2407 bp Feature: domain Description: HNHc Note: nucleases Location: 2641-2797 bp Feature: domain Description: HNHc Note: nucleases Location: 2641-2797 bp Feature: gene Location: 2990-5905 bp Ori: ONP10300.1 Feature: domain Description: DUF4158 Location: 3029-3494 bp Feature: domain Description: DUF415 8 Location: 3029-3494 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4682-5828 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4682-5 828 bp Feature: gene Location: 6036-7106 bp Feature: domain Description: RVT_N Location: 6093-6330 bp Feature: domain Description: RVT_N Location: 6093-6330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-7032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-7032 bp Feature: gene Location: 7702-8757 bp Ori: ONP10301.1 Feature: domain Description: DEXHc_Snf Location: 7921-8176 bp Feature: domain Description: DEXHc_Snf Location: 7921-8176 bp Feature: gene Location: 8894-9199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUQK01000052.1 Burkholderia cenocepacia strain VC9040 VC9040_contig-11000005, whole genome shotgun sequence (208615 bp)
Overview 1 RT 1: 168821-173429 bp Neighborhood of RT #1 [168821, 173437] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 168821-169015 bp Feature: gene Location: 169395-170429 bp Ori: ONP18511.1 Feature: domain Description: COG3547 Location: 169410-170373 bp Feature: domain Description: COG3547 Location: 16 9410-170373 bp Feature: gene Location: 170600-171967 bp Ori: ONP18512.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170933-171548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170933-171548 bp Feature: domain Description: GIIM Note: maturase Location: 171608-171809 bp Feature: domain Description: GIIM Note: maturase Location: 1716 08-171809 bp Feature: gene Location: 172075-172962 bp Ori: ONP18513.1 Feature: domain Description: RsmI Location: 172123-172936 bp Feature: domain Description: RsmI Location: 172123-172936 bp Feature: gene Location: 172961-173437 bp Ori: ONP18514.1 Feature: domain Description: PRK14673 Location: 173012-173429 bp Feature: domain Description: PRK146 73 Location: 173012-173429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)