myRT

myRT report for GCA_001994615.1_ASM199461v1

Download annotations/find similar RTs

Seq: MURB01000161.1 Burkholderia cenocepacia strain VC4480 VC4480_contig-7000008, whole genome shotgun sequence (46948 bp)
Overview 1 RT 1: 3971-9656 bp Neighborhood of RT #1 [3971, 9700] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3971-4483 bp Feature: domain Description: SnoaL_4 Location: 3992-4361 bp Feature: domain Description: SnoaL_4 Location: 3992-4361 bp Feature: gene Location: 4536-5252 bp Feature: domain Description: EthD Location: 4602-4788 bp Feature: domain Description: EthD Location: 4602-4788 bp Feature: domain Description: EthD Location: 4926-5199 bp Feature: domain Description: EthD Location: 4926-51 99 bp Feature: gene Location: 5349-6590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5541-6159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5541 -61 59 bp Feature: domain Description: GIIM Note: maturase Location: 6210-6414 bp Feature: domain Description: GIIM Note: maturase Location: 621 0-641 4 bp Feature: gene Location: 7189-8772 bp Feature: domain Description: PRK06498 Location: 7192-8770 bp Feature: domain Description: PRK06498 Location: 71 92-8770 bp Feature: gene Location: 9179-9700 bp Feature: domain Description: YeaK Location: 9200-9656 bp Feature: domain Description: YeaK Location: 9200-9656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MURB01000030.1 Burkholderia cenocepacia strain VC4480 VC4480_contig-2000001, whole genome shotgun sequence (265044 bp)
Overview 1 RT 1: 126366-130181 bp Neighborhood of RT #1 [126366, 130186] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 126366-126695 bp Feature: domain Description: Histone_HNS Location: 126387-126624 bp Feature: domain Description: Histone_HNS Location: 12 6387-12 662 4 bp Feature: gene Location: 126842-127048 bp Feature: gene Location: 127021-128370 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127486-128122 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 7486-12 812 2 bp Feature: gene Location: 128624-129196 bp Feature: domain Description: FIN Location: 128810-129161 bp Feature: domain Description: FIN Location: 12 8810-12 9161 bp Feature: gene Location: 129431-130186 bp Feature: domain Description: his_ut_repres Location: 129509-130181 bp Feature: domain Description: his_ut_repres Location: 12 9509-130181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MURB01000111.1 Burkholderia cenocepacia strain VC4480 VC4480_contig-9000005, whole genome shotgun sequence (122496 bp)
Overview 1 RT 1: 59384-65689 bp Neighborhood of RT #1 [59384, 65754] DUF3987 COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 59384-60508 bp Feature: domain Description: DUF3987 Location: 59507-60473 bp Feature: domain Description: DUF3 987 Location: 59507-60473 bp Feature: gene Location: 60764-61798 bp Feature: domain Description: COG3547 Location: 60779-61742 bp Feature: domain Description: COG3 547 Location: 60779-61742 bp Feature: gene Location: 61963-63360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62296-62914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62296-62914 bp Feature: domain Description: GIIM Note: maturase Location: 62965-63175 bp Feature: domain Description: GIIM Note: maturase Location: 62965-63 175 bp Feature: gene Location: 63450-64088 bp Feature: domain Description: AcrR Location: 63513-64074 bp Feature: domain Description: AcrR Location: 63 513 -64074 bp Feature: gene Location: 64234-65754 bp Feature: domain Description: MFS_MMR_MDR_like Location: 64276-65689 bp Feature: domain Description: MFS_MMR_MDR_like Location: 64276-65689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)