myRT

myRT report for GCA_001994665.1_ASM199466v1

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Seq: MURV01000101.1 Burkholderia cenocepacia strain VC7348 VC7348_contig-4000010, whole genome shotgun sequence (22123 bp)
Overview 1 RT 1: 18080-21697 bp Neighborhood of RT #1 [18080, 22123] PolY_like COG4544 RVT-GII Feature: gene Location: 18080-19558 bp Feature: domain Description: PolY_like Location: 18098-19085 bp Feature: domain Description: PolY_like Location: 1 8098-1 9085 bp Feature: gene Location: 19479-20195 bp Feature: domain Description: COG4544 Location: 19584-20019 bp Feature: domain Description: COG4544 Location: 1 9584-2001 9 bp Feature: gene Location: 20596-22123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21007-21697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 007-21 697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MURV01000021.1 Burkholderia cenocepacia strain VC7348 VC7348_contig-2000002, whole genome shotgun sequence (47469 bp)
Overview 1 RT 1: 1-2897 bp Neighborhood of RT #1 [1, 2897] RVT-GII Feature: gene Location: 1-1528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 -1102 bp Feature: gene Location: 2100-2519 bp Feature: gene Location: 2682-2897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MURV01000061.1 Burkholderia cenocepacia strain VC7348 VC7348_contig-8000005, whole genome shotgun sequence (275084 bp)
Overview 1 RT 1: 29985-35269 bp Neighborhood of RT #1 [29985, 35283] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 29985-30284 bp Feature: gene Location: 30593-31627 bp Feature: domain Description: COG3547 Location: 30608-31571 bp Feature: domain Description: COG3 547 Location: 3 0608-3 1571 bp Feature: gene Location: 31798-33165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32131-32746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 213 1-3 2746 bp Feature: domain Description: GIIM Note: maturase Location: 32806-33007 bp Feature: domain Description: GIIM Note: maturase Location: 3 2806-3 3 007 bp Feature: gene Location: 33285-34250 bp Feature: domain Description: GDP_MD_SDR_e Location: 33321-34218 bp Feature: domain Description: GDP_MD_SDR_e Location: 3 3 3 21-3 4218 bp Feature: gene Location: 34237-35283 bp Feature: domain Description: Gmd Location: 34252-35269 bp Feature: domain Description: Gmd Location: 3 4252-3 5269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MURV01000073.1 Burkholderia cenocepacia strain VC7348 VC7348_contig-3000007, whole genome shotgun sequence (31912 bp)
Overview 1 RT 1: 205-2703 bp Neighborhood of RT #1 [205, 2720] PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 205-1092 bp Feature: domain Description: PRK09409 Location: 208-1075 bp Feature: domain Description: PRK094 09 Location: 208-1075 bp Feature: gene Location: 1123-2058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1534-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1534 -2050 bp Feature: gene Location: 2062-2384 bp Feature: gene Location: 2388-2720 bp Feature: domain Description: TnpB_IS66 Location: 2415-2703 bp Feature: domain Description: TnpB_IS66 Location: 24 15-2703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), TnpB_IS66 (pfam05717)

Seq: MURV01000099.1 Burkholderia cenocepacia strain VC7348 VC7348_contig-2000010, whole genome shotgun sequence (84189 bp)
Overview 1 RT 1: 370-3552 bp Neighborhood of RT #1 [370, 3584] RVT-GII D Feature: gene Location: 370-1902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: gene Location: 2030-2326 bp Feature: gene Location: 2514-3584 bp Feature: domain Description: D Location: 2568-3552 bp Feature: domain Description: D Location: 25 68-35 5 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MURV01000019.1 Burkholderia cenocepacia strain VC7348 VC7348_contig-2, whole genome shotgun sequence (59849 bp)
Overview 1 RT 1: 55299-59049 bp Neighborhood of RT #1 [55299, 59480] SRAP RVT-GII Feature: gene Location: 55299-56285 bp Feature: gene Location: 56981-57892 bp Feature: domain Description: SRAP Location: 57341-57857 bp Feature: domain Description: SRAP Location: 57341-57857 bp Feature: gene Location: 57948-59480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58359-59049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58359-59049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MURV01000054.1 Burkholderia cenocepacia strain VC7348 VC7348_contig-1000005, whole genome shotgun sequence (165039 bp)
Overview 1 RT 1: 45176-48928 bp Neighborhood of RT #1 [45176, 48999] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 45176-45934 bp Feature: domain Description: his_ut_repres Location: 45254-45929 bp Feature: domain Description: his_ut_repres Location: 45254-45929 bp Feature: gene Location: 46169-46741 bp Feature: domain Description: FIN Location: 46355-46706 bp Feature: domain Description: FIN Location: 46355-467 06 bp Feature: gene Location: 46995-48344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47460-48096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47 460-48096 bp Feature: gene Location: 48317-48523 bp Feature: gene Location: 48670-48999 bp Feature: domain Description: Histone_HNS Location: 48691-48928 bp Feature: domain Description: Histone_HNS Location: 48691-48928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)