myRT

myRT report for GCA_001994695.1_ASM199469v1

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Seq: MUSN01000046.1 Burkholderia cenocepacia strain VC13395 VC13395_contig-2000007, whole genome shotgun sequence (123957 bp)
Overview 1 RT 1: 3731-9417 bp Neighborhood of RT #1 [3731, 9461] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3731-4243 bp Feature: domain Description: SnoaL_4 Location: 3752-4121 bp Feature: domain Description: SnoaL_4 Location: 3752-41 21 bp Feature: gene Location: 4296-5012 bp Feature: domain Description: EthD Location: 4362-4548 bp Feature: domain Description: EthD Location: 4362-4548 bp Feature: domain Description: EthD Location: 4686-4959 bp Feature: domain Description: EthD Location: 4686-4959 bp Feature: gene Location: 5109-6350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5301-5919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5301 -591 9 bp Feature: domain Description: GIIM Note: maturase Location: 5970-6174 bp Feature: domain Description: GIIM Note: maturase Location: 5970-61 74 bp Feature: gene Location: 6950-8533 bp Feature: domain Description: PRK06498 Location: 6953-8531 bp Feature: domain Description: PRK06498 Location: 6953-8531 bp Feature: gene Location: 8940-9461 bp Feature: domain Description: YeaK Location: 8961-9417 bp Feature: domain Description: YeaK Location: 8961 -941 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUSN01000090.1 Burkholderia cenocepacia strain VC13395 VC13395_contig-3000015, whole genome shotgun sequence (61703 bp)
Overview 1 RT 1: 1-4844 bp Neighborhood of RT #1 [1, 4909] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 1-953 bp Feature: domain Description: COG3547 Location: 16-949 bp Feature: domain Description: COG3547 Location: 16-949 bp Feature: gene Location: 1118-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1451-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1451-2 069 bp Feature: domain Description: GIIM Note: maturase Location: 2120-2330 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 0-2 330 bp Feature: gene Location: 2605-3243 bp Feature: domain Description: AcrR Location: 2668-3229 bp Feature: domain Description: AcrR Location: 2 668-32 2 9 bp Feature: gene Location: 3389-4909 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3431-4844 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3431-4844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)

Seq: MUSN01000071.1 Burkholderia cenocepacia strain VC13395 VC13395_contig-6000010, whole genome shotgun sequence (164936 bp)
Overview 1 RT 1: 34082-37831 bp Neighborhood of RT #1 [34082, 37902] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 34082-34837 bp Feature: domain Description: his_ut_repres Location: 34160-34832 bp Feature: domain Description: his_ut_repres Location: 3 4160-3 483 2 bp Feature: gene Location: 35072-35644 bp Feature: domain Description: FIN Location: 35258-35609 bp Feature: domain Description: FIN Location: 3 5258-3 5609 bp Feature: gene Location: 35898-37247 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36363-36999 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 63 63 -3 6999 bp Feature: gene Location: 37220-37426 bp Feature: gene Location: 37573-37902 bp Feature: domain Description: Histone_HNS Location: 37594-37831 bp Feature: domain Description: Histone_HNS Location: 3 7594-3 783 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)