myRT

myRT report for GCA_001994755.1_ASM199475v1

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Seq: MUVH01000099.1 Burkholderia cenocepacia strain VC8412 VC8412_contig-3000008, whole genome shotgun sequence (89208 bp)
Overview 1 RT 1: 43840-48391 bp Neighborhood of RT #1 [43840, 48423] RVT-GII D Feature: gene Location: 43840-44055 bp Feature: gene Location: 44218-44637 bp Feature: gene Location: 45209-46741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45620-46310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45620-4631 0 bp Feature: gene Location: 46869-47165 bp Feature: gene Location: 47353-48423 bp Feature: domain Description: D Location: 47407-48391 bp Feature: domain Description: D Location: 47407-48391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUVH01000082.1 Burkholderia cenocepacia strain VC8412 VC8412_contig-2000007, whole genome shotgun sequence (36080 bp)
Overview 1 RT 1: 1-2079 bp Neighborhood of RT #1 [1, 2096] PRK14702 RVT-GII TnpB_IS66 Feature: gene Location: 1-468 bp Feature: domain Description: PRK14702 Location: 4-451 bp Feature: domain Description: PRK14702 Location: 4-451 bp Feature: gene Location: 499-1434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-1426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-142 6 bp Feature: gene Location: 1438-1760 bp Feature: gene Location: 1764-2096 bp Feature: domain Description: TnpB_IS66 Location: 1791-2079 bp Feature: domain Description: TnpB_IS66 Location: 1791-2 079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14702 (insertion element IS2 transposase InsD; Provisional), TnpB_IS66 (pfam05717), RVT-GII

Seq: MUVH01000047.1 Burkholderia cenocepacia strain VC8412 VC8412_contig-10000003, whole genome shotgun sequence (166047 bp)
Overview 1 RT 1: 100164-107770 bp Neighborhood of RT #1 [100164, 107817] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 100164-100463 bp Feature: gene Location: 100772-101806 bp Feature: domain Description: COG3547 Location: 100787-101750 bp Feature: domain Description: COG3 547 Location: 100787-101750 bp Feature: gene Location: 101977-103344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102310-102925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023 10-102925 bp Feature: domain Description: GIIM Note: maturase Location: 102985-103186 bp Feature: domain Description: GIIM Note: maturase Location: 102985-103 186 bp Feature: gene Location: 103488-105950 bp Feature: domain Description: MscK Location: 103566-105909 bp Feature: domain Description: MscK Location: 103 566-105909 bp Feature: gene Location: 106399-107817 bp Feature: domain Description: MFS_SV2_like Location: 106519-107770 bp Feature: domain Description: MFS_SV2_like Location: 106519-107770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVH01000065.1 Burkholderia cenocepacia strain VC8412 VC8412_contig-2000005, whole genome shotgun sequence (54967 bp)
Overview 1 RT 1: 51317-54644 bp Neighborhood of RT #1 [51317, 54802] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 51317-52363 bp Feature: domain Description: Gmd Location: 51332-52349 bp Feature: domain Description: Gmd Location: 51332-5234 9 bp Feature: gene Location: 52350-53315 bp Feature: domain Description: GDP_MD_SDR_e Location: 52386-53283 bp Feature: domain Description: GDP_MD_SDR_e Location: 52386-53283 bp Feature: gene Location: 53435-54802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53768-54383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53768-54 383 bp Feature: domain Description: GIIM Note: maturase Location: 54443-54644 bp Feature: domain Description: GIIM Note: maturase Location: 54 4 4 3-54 64 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUVH01000103.1 Burkholderia cenocepacia strain VC8412 VC8412_contig-7000008, whole genome shotgun sequence (7197 bp)
Overview 1 RT 1: 2837-6587 bp Neighborhood of RT #1 [2837, 7018] SRAP RVT-GII Feature: gene Location: 2837-3823 bp Feature: gene Location: 4519-5430 bp Feature: domain Description: SRAP Location: 4879-5395 bp Feature: domain Description: SRAP Location: 4879-5 395 bp Feature: gene Location: 5486-7018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5897-6587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 897-65 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUVH01000014.1 Burkholderia cenocepacia strain VC8412 VC8412_contig-1, whole genome shotgun sequence (164551 bp)
Overview 1 RT 1: 49134-52883 bp Neighborhood of RT #1 [49134, 52954] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49134-49889 bp Feature: domain Description: his_ut_repres Location: 49212-49884 bp Feature: domain Description: his_ut_repres Location: 49212-49884 bp Feature: gene Location: 50124-50696 bp Feature: domain Description: FIN Location: 50310-50661 bp Feature: domain Description: FIN Location: 50310-506 6 1 bp Feature: gene Location: 50950-52299 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51415-52051 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51415-52051 bp Feature: gene Location: 52272-52478 bp Feature: gene Location: 52625-52954 bp Feature: domain Description: Histone_HNS Location: 52646-52883 bp Feature: domain Description: Histone_HNS Location: 526 46 -52883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)