myRT

myRT report for GCA_001994775.1_ASM199477v1

Download annotations/find similar RTs

Seq: MUPZ01000049.1 Burkholderia cenocepacia strain VC6133 VC6133_contig-5000005, whole genome shotgun sequence (159733 bp)
Overview 1 RT 1: 34943-41916 bp Neighborhood of RT #1 [34943, 41963] DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 34943-35248 bp Feature: gene Location: 35385-36440 bp Ori: ONO12554.1 Feature: domain Description: DEXHc_Snf Location: 35604-35859 bp Feature: domain Description: DEXHc_Snf Location: 35604-35859 bp Feature: gene Location: 37036-38106 bp Feature: domain Description: RVT_N Location: 37093-37330 bp Feature: domain Description: RVT_N Location: 37093-37330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37381-38032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37381 -38032 bp Feature: gene Location: 38237-41152 bp Ori: ONO12555.1 Feature: domain Description: DUF4158 Location: 38276-38741 bp Feature: domain Description: DUF41 58 Location: 38276-38741 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 39929-41075 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 39929-41 075 bp Feature: gene Location: 41298-41963 bp Feature: domain Description: GIIM Note: maturase Location: 41301-41526 bp Feature: domain Description: GIIM Note: maturase Location: 41 301 -41 526 bp Feature: domain Description: HNHc Note: nucleases Location: 41760-41916 bp Feature: domain Description: HNHc Note: nucleases Location: 41 760-41 91 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUPZ01000099.1 Burkholderia cenocepacia strain VC6133 VC6133_contig-10000011, whole genome shotgun sequence (106480 bp)
Overview 1 RT 1: 103247-106235 bp Neighborhood of RT #1 [103247, 106393] COG3547 RVT-GII GIIM Feature: gene Location: 103247-103441 bp Feature: gene Location: 103821-104855 bp Ori: ONO04818.1 Feature: domain Description: COG3547 Location: 103836-104799 bp Feature: domain Description: COG3547 Location: 103836-104799 bp Feature: gene Location: 105026-106393 bp Ori: ONO04819.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105359-105974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105359-105974 bp Feature: domain Description: GIIM Note: maturase Location: 106034-106235 bp Feature: domain Description: GIIM Note: maturase Location: 106034-1062 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUPZ01000128.1 Burkholderia cenocepacia strain VC6133 VC6133_contig-2000015, whole genome shotgun sequence (46797 bp)
Overview 1 RT 1: 41441-46797 bp Neighborhood of RT #1 [41441, 46797] HATPase_c_3 RVT-UG5 Feature: gene Location: 41441-42130 bp Feature: gene Location: 42382-44397 bp Ori: ONO00069.1 Feature: domain Description: HATPase_c_3 Location: 42451-42775 bp Feature: domain Description: HATPase_c_3 Location: 42451-42775 bp Feature: gene Location: 44925-46379 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44934-45408 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4493 4-45408 bp Feature: gene Location: 46428-46797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5

Seq: MUPZ01000029.1 Burkholderia cenocepacia strain VC6133 VC6133_contig-3000003, whole genome shotgun sequence (140830 bp)
Overview 1 RT 1: 11462-15211 bp Neighborhood of RT #1 [11462, 15282] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11462-12217 bp Ori: ONO16307.1 Feature: domain Description: his_ut_repres Location: 11540-12212 bp Feature: domain Description: his_ut_repres Location: 1154 0-12212 bp Feature: gene Location: 12452-13024 bp Ori: ONO16308.1 Feature: domain Description: FIN Location: 12638-12989 bp Feature: domain Description: FIN Location: 12638-12989 bp Feature: gene Location: 13278-14627 bp Ori: ONO16309.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13743-14379 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1374 3-14 379 bp Feature: gene Location: 14600-14806 bp Feature: gene Location: 14953-15282 bp Ori: ONO16311.1 Feature: domain Description: Histone_HNS Location: 14974-15211 bp Feature: domain Description: Histone_HNS Location: 14 974 -15211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)