myRT

myRT report for GCA_001994795.1_ASM199479v1

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Seq: MUWS01000183.1 Burkholderia cenocepacia strain VC9872 VC9872_contig-1000015, whole genome shotgun sequence (119371 bp)
Overview 1 RT 1: 109535-117912 bp Neighborhood of RT #1 [109535, 118133] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 109535-110641 bp Ori: OOB42813.1 Feature: domain Description: PRK05643 Location: 109547-110639 bp Feature: domain Description: PRK05643 Location: 1 09547-1 1 0639 bp Feature: gene Location: 110834-113308 bp Ori: OOB42814.1 Feature: domain Description: gyrB Location: 110864-113306 bp Feature: domain Description: gyrB Location: 1 1 0864-1 1 3306 bp Feature: gene Location: 113734-115485 bp Ori: OOB42815.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113869-114511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 3869-1 1 451 1 bp Feature: gene Location: 115580-117301 bp Ori: OOB42816.1 Feature: domain Description: YjgR Location: 116063-116327 bp Feature: domain Description: YjgR Location: 1 1 6063-1 1 6327 bp Feature: domain Description: YjgR Location: 116822-117224 bp Feature: domain Description: YjgR Location: 1 1 6822-1 1 7224 bp Feature: gene Location: 117294-118133 bp Ori: OOB42817.1 Feature: domain Description: SIR2_2 Location: 117468-117912 bp Feature: domain Description: SIR2_2 Location: 1 1 7468-1 1 791 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWS01000147.1 Burkholderia cenocepacia strain VC9872 VC9872_contig-12000011, whole genome shotgun sequence (43534 bp)
Overview 1 RT 1: 10718-16143 bp Neighborhood of RT #1 [10718, 16163] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 10718-11410 bp Ori: OOB46931.1 Feature: domain Description: DLH Location: 10730-11408 bp Feature: domain Description: DLH Location: 10730-11408 bp Feature: gene Location: 11491-12969 bp Ori: OOB46964.1 Feature: domain Description: GatA Location: 11518-12946 bp Feature: domain Description: GatA Location: 11518-12 946 bp Feature: gene Location: 13079-14476 bp Ori: OOB46932.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13412-14030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13412 -14030 bp Feature: domain Description: GIIM Note: maturase Location: 14081-14291 bp Feature: domain Description: GIIM Note: maturase Location: 14081-142 91 bp Feature: gene Location: 14949-15779 bp Ori: OOB46933.1 Feature: domain Description: fadh2 Location: 14967-15771 bp Feature: domain Description: fadh2 Location: 14967-15771 bp Feature: gene Location: 15810-16163 bp Ori: OOB46934.1 Feature: domain Description: YvlD Location: 15813-16143 bp Feature: domain Description: YvlD Location: 15813-16143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWS01000176.1 Burkholderia cenocepacia strain VC9872 VC9872_contig-6000014, whole genome shotgun sequence (16364 bp)
Overview 1 RT 1: 1-6656 bp Neighborhood of RT #1 [1, 6656] IS285 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-456 bp Ori: OOB43546.1 Feature: domain Description: IS285 Location: 55-457 bp Feature: domain Description: IS285 Location: 55-457 bp Feature: gene Location: 641-3634 bp Ori: OOB43556.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1112-1586 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1112-1586 bp Feature: gene Location: 3700-5715 bp Ori: OOB43547.1 Feature: domain Description: HATPase_c_3 Location: 3769-4093 bp Feature: domain Description: HATPase_c_3 Location: 3 769-4093 bp Feature: gene Location: 5967-6656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUWS01000148.1 Burkholderia cenocepacia strain VC9872 VC9872_contig-13000011, whole genome shotgun sequence (1709 bp)
Overview 1 RT 1: 1-1701 bp Neighborhood of RT #1 [1, 1701] RVT-GII GIIM Feature: gene Location: 1-1301 bp Ori: OOB46911.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334 -94 9 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: gene Location: 1372-1701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUWS01000068.1 Burkholderia cenocepacia strain VC9872 VC9872_contig-4000005, whole genome shotgun sequence (208271 bp)
Overview 1 RT 1: 146222-150037 bp Neighborhood of RT #1 [146222, 150042] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 146222-146551 bp Ori: OOB55196.1 Feature: domain Description: Histone_HNS Location: 146243-146480 bp Feature: domain Description: Histone_HNS Location: 146243-146480 bp Feature: gene Location: 146698-146904 bp Feature: gene Location: 146877-148226 bp Ori: OOB55198.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147342-147978 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147342-147978 bp Feature: gene Location: 148480-149052 bp Ori: OOB55199.1 Feature: domain Description: FIN Location: 148666-149017 bp Feature: domain Description: FIN Location: 148666-149017 bp Feature: gene Location: 149287-150042 bp Ori: OOB55200.1 Feature: domain Description: his_ut_repres Location: 149365-150037 bp Feature: domain Description: his_ut_repres Location: 149365 -15 0037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)