myRT

myRT report for GCA_001994815.1_ASM199481v1

Download annotations/find similar RTs

Seq: MUPT01000001.1 Burkholderia cenocepacia strain VC2448 VC2448_contig-0, whole genome shotgun sequence (232125 bp)
Overview 1 RT 1: 29441-33830 bp Neighborhood of RT #1 [29441, 33853] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29441-29701 bp Feature: gene Location: 29716-31617 bp Ori: ONN96027.1 Feature: domain Description: Dcm Location: 29749-30355 bp Feature: domain Description: Dcm Location: 29749-30355 bp Feature: domain Description: Dcm Location: 31354-31513 bp Feature: domain Description: Dcm Location: 31 354-31 51 3 bp Feature: gene Location: 31676-32674 bp Ori: ONN96028.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31769-32456 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 769-32456 bp Feature: gene Location: 33018-33374 bp Ori: ONN96029.1 Feature: domain Description: Avd_like Location: 33045-33351 bp Feature: domain Description: Avd_like Location: 33045-33351 bp Feature: gene Location: 33389-33853 bp Ori: ONN96030.1 Feature: domain Description: DUF1566 Location: 33650-33830 bp Feature: domain Description: DUF1 566 Location: 33650-33830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUPT01000077.1 Burkholderia cenocepacia strain VC2448 VC2448_contig-1000010, whole genome shotgun sequence (44348 bp)
Overview 1 RT 1: 35502-42475 bp Neighborhood of RT #1 [35502, 42522] DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 35502-35807 bp Feature: gene Location: 35944-36999 bp Ori: ONN82406.1 Feature: domain Description: DEXHc_Snf Location: 36163-36418 bp Feature: domain Description: DEXHc_Snf Location: 36163-36418 bp Feature: gene Location: 37595-38665 bp Feature: domain Description: RVT_N Location: 37652-37889 bp Feature: domain Description: RVT_N Location: 37652 -37889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37940-38591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37940-38591 bp Feature: gene Location: 38796-41711 bp Ori: ONN82407.1 Feature: domain Description: DUF4158 Location: 38835-39300 bp Feature: domain Description: DUF4158 Location: 38835-39300 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 40488-41634 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 40488-41634 bp Feature: gene Location: 41857-42522 bp Feature: domain Description: GIIM Note: maturase Location: 41860-42085 bp Feature: domain Description: GIIM Note: maturase Location: 41860-42 085 bp Feature: domain Description: HNHc Note: nucleases Location: 42319-42475 bp Feature: domain Description: HNHc Note: nucleases Location: 42 319-42 475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUPT01000062.1 Burkholderia cenocepacia strain VC2448 VC2448_contig-8, whole genome shotgun sequence (41046 bp)
Overview 1 RT 1: 1-3666 bp Neighborhood of RT #1 [1, 3674] COG3547 RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 1-953 bp Ori: ONN84718.1 Feature: domain Description: COG3547 Location: 16-949 bp Feature: domain Description: COG3 547 Location: 16-949 bp Feature: gene Location: 1124-2491 bp Ori: ONN84719.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-2072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-2072 bp Feature: domain Description: GIIM Note: maturase Location: 2132-2333 bp Feature: domain Description: GIIM Note: maturase Location: 213 2-23 3 3 bp Feature: gene Location: 2772-3131 bp Ori: ONN84720.1 Feature: domain Description: COG4315 Location: 2793-3129 bp Feature: domain Description: COG43 15 Location: 2793 -3 129 bp Feature: gene Location: 3159-3674 bp Ori: ONN84721.1 Feature: domain Description: PRK12511 Location: 3171-3666 bp Feature: domain Description: PRK12511 Location: 3 171-3 666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)

Seq: MUPT01000048.1 Burkholderia cenocepacia strain VC2448 VC2448_contig-6000005, whole genome shotgun sequence (42007 bp)
Overview 1 RT 1: 1439-6047 bp Neighborhood of RT #1 [1439, 6055] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 1439-1633 bp Feature: gene Location: 2013-3047 bp Ori: ONN87436.1 Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: domain Description: COG354 7 Location: 2028-2991 bp Feature: gene Location: 3218-4585 bp Ori: ONN87437.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4 166 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: domain Description: GIIM Note: maturase Location: 4 226-4 4 27 bp Feature: gene Location: 4693-5580 bp Ori: ONN87438.1 Feature: domain Description: RsmI Location: 4741-5554 bp Feature: domain Description: RsmI Location: 4 74 1-5554 bp Feature: gene Location: 5579-6055 bp Ori: ONN87439.1 Feature: domain Description: PRK14673 Location: 5630-6047 bp Feature: domain Description: PRK14 673 Location: 5630-604 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUPT01000070.1 Burkholderia cenocepacia strain VC2448 VC2448_contig-8000008, whole genome shotgun sequence (191921 bp)
Overview 1 RT 1: 41437-47491 bp 2 RT 2: 62553-66302 bp Neighborhood of RT #1 [41437, 47544] HATPase_c_3 RVT-UG5 Tra5 HTH_Tnp_1 Neighborhood of RT #2 [62553, 66373] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 41437-42126 bp Feature: gene Location: 42378-44393 bp Ori: ONN83930.1 Feature: domain Description: HATPase_c_3 Location: 42447-42771 bp Feature: domain Description: HATPase_c_3 Location: 42447-42771 bp Feature: gene Location: 44921-46375 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44930-45404 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44930-45 404 bp Feature: gene Location: 46424-47257 bp Ori: ONN83931.1 Feature: domain Description: Tra5 Location: 46445-47225 bp Feature: domain Description: Tra5 Location: 46445 -47225 bp Feature: gene Location: 47281-47544 bp Ori: ONN83932.1 Feature: domain Description: HTH_Tnp_1 Location: 47287-47491 bp Feature: domain Description: HTH_Tnp_1 Location: 47287-47491 bp Feature: gene Location: 62553-63308 bp Ori: ONN83944.1 Feature: domain Description: his_ut_repres Location: 62631-63303 bp Feature: domain Description: his_ut_repres Location: 62631-63303 bp Feature: gene Location: 63543-64115 bp Ori: ONN83945.1 Feature: domain Description: FIN Location: 63729-64080 bp Feature: domain Description: FIN Location: 63729-64080 bp Feature: gene Location: 64369-65718 bp Ori: ONN83946.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64834-65470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64834-65 470 bp Feature: gene Location: 65691-65897 bp Feature: gene Location: 66044-66373 bp Ori: ONN83948.1 Feature: domain Description: Histone_HNS Location: 66065-66302 bp Feature: domain Description: Histone_HNS Location: 66065 -66302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, Tra5 (COG2801), HTH_Tnp_1 (pfam01527), his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)