myRT

myRT report for GCA_001994835.1_ASM199483v1

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Seq: MUSF01000034.1 Burkholderia cenocepacia strain VC6917 VC6917_contig-2000004, whole genome shotgun sequence (35016 bp)
Overview 1 RT 1: 3730-9415 bp Neighborhood of RT #1 [3730, 9459] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3730-4242 bp Feature: domain Description: SnoaL_4 Location: 3751-4120 bp Feature: domain Description: SnoaL_4 Location: 3751 -41 20 bp Feature: gene Location: 4295-5011 bp Feature: domain Description: EthD Location: 4361-4547 bp Feature: domain Description: EthD Location: 4361 -4547 bp Feature: domain Description: EthD Location: 4685-4958 bp Feature: domain Description: EthD Location: 4685-4958 bp Feature: gene Location: 5108-6349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-5918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-591 8 bp Feature: domain Description: GIIM Note: maturase Location: 5969-6173 bp Feature: domain Description: GIIM Note: maturase Location: 5969-61 73 bp Feature: gene Location: 6948-8531 bp Feature: domain Description: PRK06498 Location: 6951-8529 bp Feature: domain Description: PRK06498 Location: 6951 -8529 bp Feature: gene Location: 8938-9459 bp Feature: domain Description: YeaK Location: 8959-9415 bp Feature: domain Description: YeaK Location: 8959-941 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUSF01000088.1 Burkholderia cenocepacia strain VC6917 VC6917_contig-1000013, whole genome shotgun sequence (164716 bp)
Overview 1 RT 1: 34015-37764 bp Neighborhood of RT #1 [34015, 37835] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 34015-34770 bp Feature: domain Description: his_ut_repres Location: 34093-34765 bp Feature: domain Description: his_ut_repres Location: 34093-34765 bp Feature: gene Location: 35005-35577 bp Feature: domain Description: FIN Location: 35191-35542 bp Feature: domain Description: FIN Location: 35191-35542 bp Feature: gene Location: 35831-37180 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36296-36932 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 362 96-36932 bp Feature: gene Location: 37153-37359 bp Feature: gene Location: 37506-37835 bp Feature: domain Description: Histone_HNS Location: 37527-37764 bp Feature: domain Description: Histone_HNS Location: 3752 7-37764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUSF01000103.1 Burkholderia cenocepacia strain VC6917 VC6917_contig-2000015, whole genome shotgun sequence (61790 bp)
Overview 1 RT 1: 10-4935 bp Neighborhood of RT #1 [10, 5000] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3 547 Location: 25-988 bp Feature: gene Location: 1209-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: gene Location: 2696-3334 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: domain Description: AcrR Location: 2759-3 3 20 bp Feature: gene Location: 3480-5000 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3 522-493 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)