myRT

myRT report for GCA_001994875.1_ASM199487v1

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Seq: MUVI01000070.1 Burkholderia cenocepacia strain VC9459 VC9459_contig-19000005, whole genome shotgun sequence (64582 bp)
Overview 1 RT 1: 56923-64576 bp Neighborhood of RT #1 [56923, 64576] MFS_SV2_like MscK RVT-GII GIIM COG3547 Feature: gene Location: 56923-58341 bp Ori: ONY96371.1 Feature: domain Description: MFS_SV2_like Location: 57043-58294 bp Feature: domain Description: MFS_SV2_like Location: 57043-58294 bp Feature: gene Location: 58790-61252 bp Ori: ONY96372.1 Feature: domain Description: MscK Location: 58868-61211 bp Feature: domain Description: MscK Location: 58868-61 21 1 bp Feature: gene Location: 61396-62763 bp Ori: ONY96373.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61729-62344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 729-62344 bp Feature: domain Description: GIIM Note: maturase Location: 62404-62605 bp Feature: domain Description: GIIM Note: maturase Location: 62404-62605 bp Feature: gene Location: 62934-63968 bp Ori: ONY96374.1 Feature: domain Description: COG3547 Location: 62949-63912 bp Feature: domain Description: COG3547 Location: 62949-6391 2 bp Feature: gene Location: 64277-64576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUVI01000124.1 Burkholderia cenocepacia strain VC9459 VC9459_contig-11, whole genome shotgun sequence (71221 bp)
Overview 1 RT 1: 67400-70763 bp Neighborhood of RT #1 [67400, 71194] SRAP RVT-GII Feature: gene Location: 67400-68386 bp Feature: gene Location: 69082-69993 bp Ori: ONY89859.1 Feature: domain Description: SRAP Location: 69442-69958 bp Feature: domain Description: SRAP Location: 69442 -69958 bp Feature: gene Location: 70049-71194 bp Ori: ONY89860.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70073-70763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70073-70763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUVI01000165.1 Burkholderia cenocepacia strain VC9459 VC9459_contig-3000014, whole genome shotgun sequence (43607 bp)
Overview 1 RT 1: 40753-43149 bp Neighborhood of RT #1 [40753, 43580] D RVT-GII Feature: gene Location: 40753-41823 bp Ori: ONY85439.1 Feature: domain Description: D Location: 40807-41791 bp Feature: domain Description: D Location: 40807-41791 bp Feature: gene Location: 42011-42307 bp Feature: gene Location: 42435-43580 bp Ori: ONY85441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42459-43149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42459-43 149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVI01000012.1 Burkholderia cenocepacia strain VC9459 VC9459_contig-1, whole genome shotgun sequence (99962 bp)
Overview 1 RT 1: 104-1684 bp Neighborhood of RT #1 [104, 1701] RVT-GII TnpB_IS66 Feature: gene Location: 104-1039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 515-1031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 515-1031 bp Feature: gene Location: 1043-1365 bp Feature: gene Location: 1369-1701 bp Ori: ONZ03112.1 Feature: domain Description: TnpB_IS66 Location: 1396-1684 bp Feature: domain Description: TnpB_IS66 Location: 1396-1684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUVI01000106.1 Burkholderia cenocepacia strain VC9459 VC9459_contig-1000009, whole genome shotgun sequence (46261 bp)
Overview 1 RT 1: 1-2034 bp Neighborhood of RT #1 [1, 2034] RVT-GII Feature: gene Location: 1-581 bp Ori: ONY91732.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-5 80 bp Feature: gene Location: 1237-1656 bp Feature: gene Location: 1819-2034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUVI01000156.1 Burkholderia cenocepacia strain VC9459 VC9459_contig-8000013, whole genome shotgun sequence (22024 bp)
Overview 1 RT 1: 17955-21572 bp Neighborhood of RT #1 [17955, 22003] PolY_like COG4544 RVT-GII Feature: gene Location: 17955-19433 bp Ori: ONY86649.1 Feature: domain Description: PolY_like Location: 17973-18960 bp Feature: domain Description: PolY_like Location: 17973-1896 0 bp Feature: gene Location: 19354-20070 bp Ori: ONY86650.1 Feature: domain Description: COG4544 Location: 19459-19894 bp Feature: domain Description: COG4544 Location: 19459-19894 bp Feature: gene Location: 20471-22003 bp Ori: ONY86651.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20882-21572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20882-21572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUVI01000001.1 Burkholderia cenocepacia strain VC9459 VC9459_contig-0, whole genome shotgun sequence (99517 bp)
Overview 1 RT 1: 48881-52630 bp Neighborhood of RT #1 [48881, 52701] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 48881-49636 bp Ori: ONZ04665.1 Feature: domain Description: his_ut_repres Location: 48959-49631 bp Feature: domain Description: his_ut_repres Location: 48959-49631 bp Feature: gene Location: 49871-50443 bp Ori: ONZ04666.1 Feature: domain Description: FIN Location: 50057-50408 bp Feature: domain Description: FIN Location: 50057 -50408 bp Feature: gene Location: 50697-52046 bp Ori: ONZ04667.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51162-51798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51162-517 98 bp Feature: gene Location: 52019-52225 bp Feature: gene Location: 52372-52701 bp Ori: ONZ04669.1 Feature: domain Description: Histone_HNS Location: 52393-52630 bp Feature: domain Description: Histone_HNS Location: 52393-52630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)