myRT

myRT report for GCA_001994895.1_ASM199489v1

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Seq: MUVK01000135.1 Burkholderia cenocepacia strain VC4896 VC4896_contig-8000009, whole genome shotgun sequence (161857 bp)
Overview 1 RT 1: 11844-15593 bp Neighborhood of RT #1 [11844, 15664] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11844-12599 bp Ori: ONY69941.1 Feature: domain Description: his_ut_repres Location: 11922-12594 bp Feature: domain Description: his_ut_repres Location: 1 1 922-1 2594 bp Feature: gene Location: 12834-13406 bp Ori: ONY69942.1 Feature: domain Description: FIN Location: 13020-13371 bp Feature: domain Description: FIN Location: 1 3020-1 3371 bp Feature: gene Location: 13660-15009 bp Ori: ONY69943.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14125-14761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 41 25-1 4761 bp Feature: gene Location: 14982-15188 bp Feature: gene Location: 15335-15664 bp Ori: ONY69945.1 Feature: domain Description: Histone_HNS Location: 15356-15593 bp Feature: domain Description: Histone_HNS Location: 1 5356-1 5593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVK01000162.1 Burkholderia cenocepacia strain VC4896 VC4896_contig-9000011, whole genome shotgun sequence (1672 bp)
Overview 1 RT 1: 1-1667 bp Neighborhood of RT #1 [1, 1667] RVT-GII GIIM Feature: gene Location: 1-1267 bp Ori: ONY66489.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1009-12 10 bp Feature: gene Location: 1338-1667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUVK01000147.1 Burkholderia cenocepacia strain VC4896 VC4896_contig-10000010, whole genome shotgun sequence (32406 bp)
Overview 1 RT 1: 15805-21248 bp Neighborhood of RT #1 [15805, 21250] YvlD fadh2 RVT-GII GIIM GatA DLH Feature: gene Location: 15805-16158 bp Ori: ONY67766.1 Feature: domain Description: YvlD Location: 15808-16138 bp Feature: domain Description: YvlD Location: 15808-1613 8 bp Feature: gene Location: 16189-17019 bp Ori: ONY67767.1 Feature: domain Description: fadh2 Location: 16207-17011 bp Feature: domain Description: fadh2 Location: 16207-17011 bp Feature: gene Location: 17492-18889 bp Ori: ONY67768.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17825-18443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17825-18443 bp Feature: domain Description: GIIM Note: maturase Location: 18494-18704 bp Feature: domain Description: GIIM Note: maturase Location: 18494-18704 bp Feature: gene Location: 18999-20477 bp Ori: ONY67780.1 Feature: domain Description: GatA Location: 19026-20454 bp Feature: domain Description: GatA Location: 19026-20454 bp Feature: gene Location: 20558-21250 bp Ori: ONY67769.1 Feature: domain Description: DLH Location: 20570-21248 bp Feature: domain Description: DLH Location: 20570-21248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738)

Seq: MUVK01000063.1 Burkholderia cenocepacia strain VC4896 VC4896_contig-2000004, whole genome shotgun sequence (38119 bp)
Overview 1 RT 1: 32824-38119 bp Neighborhood of RT #1 [32824, 38119] PRK05643 gyrB RVT-Retrons Feature: gene Location: 32824-33930 bp Ori: ONY77600.1 Feature: domain Description: PRK05643 Location: 32836-33928 bp Feature: domain Description: PRK0564 3 Location: 32836-33928 bp Feature: gene Location: 34123-36597 bp Ori: ONY77601.1 Feature: domain Description: gyrB Location: 34153-36595 bp Feature: domain Description: gyrB Location: 34 153-36595 bp Feature: gene Location: 37023-37730 bp Ori: ONY77602.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37158-37659 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37158-37659 bp Feature: gene Location: 37702-38119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons

Seq: MUVK01000038.1 Burkholderia cenocepacia strain VC4896 VC4896_contig-11000002, whole genome shotgun sequence (23792 bp)
Overview 1 RT 1: 1-1425 bp Neighborhood of RT #1 [1, 1427] RVT-GII COG1981 Feature: gene Location: 1-525 bp Ori: ONY79998.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-5 23 bp Feature: gene Location: 596-925 bp Feature: gene Location: 1011-1427 bp Ori: ONY79980.1 Feature: domain Description: COG1981 Location: 1014-1425 bp Feature: domain Description: COG1981 Location: 1014-1425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG1981 (Uncharacterized membrane protein )