myRT

myRT report for GCA_001994915.1_ASM199491v1

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Seq: MUVX01000072.1 Burkholderia cenocepacia strain VC6589 VC6589_contig-30000002, whole genome shotgun sequence (103417 bp)
Overview 1 RT 1: 100150-103172 bp Neighborhood of RT #1 [100150, 103330] COG3547 RVT-GII GIIM Feature: gene Location: 100150-100449 bp Feature: gene Location: 100758-101792 bp Ori: OOA06069.1 Feature: domain Description: COG3547 Location: 100773-101736 bp Feature: domain Description: COG3547 Location: 1 00773-1 01 736 bp Feature: gene Location: 101963-103330 bp Ori: OOA06070.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102296-102911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02296-1 0291 1 bp Feature: domain Description: GIIM Note: maturase Location: 102971-103172 bp Feature: domain Description: GIIM Note: maturase Location: 1 02971 -1 031 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUVX01000324.1 Burkholderia cenocepacia strain VC6589 VC6589_contig-15000015, whole genome shotgun sequence (165036 bp)
Overview 1 RT 1: 49185-52934 bp Neighborhood of RT #1 [49185, 53005] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49185-49940 bp Ori: ONZ78648.1 Feature: domain Description: his_ut_repres Location: 49263-49935 bp Feature: domain Description: his_ut_repres Location: 492 63-49935 bp Feature: gene Location: 50175-50747 bp Ori: ONZ78649.1 Feature: domain Description: FIN Location: 50361-50712 bp Feature: domain Description: FIN Location: 50361-50712 bp Feature: gene Location: 51001-52350 bp Ori: ONZ78650.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52 102 bp Feature: gene Location: 52323-52529 bp Feature: gene Location: 52676-53005 bp Ori: ONZ78652.1 Feature: domain Description: Histone_HNS Location: 52697-52934 bp Feature: domain Description: Histone_HNS Location: 52 697-52 934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVX01000068.1 Burkholderia cenocepacia strain VC6589 VC6589_contig-26000002, whole genome shotgun sequence (17250 bp)
Overview 1 RT 1: 1-1749 bp Neighborhood of RT #1 [1, 1766] HTH_Tnp_1 RVT-GII TnpB_IS66 Feature: gene Location: 1-189 bp Feature: gene Location: 186-449 bp Ori: OOA06888.1 Feature: domain Description: HTH_Tnp_1 Location: 192-396 bp Feature: domain Description: HTH_Tnp_1 Location: 192-3 96 bp Feature: gene Location: 517-1104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1096 bp Feature: gene Location: 1108-1430 bp Feature: gene Location: 1434-1766 bp Ori: OOA06889.1 Feature: domain Description: TnpB_IS66 Location: 1461-1749 bp Feature: domain Description: TnpB_IS66 Location: 1461-1749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUVX01000265.1 Burkholderia cenocepacia strain VC6589 VC6589_contig-5000012, whole genome shotgun sequence (2216 bp)
Overview 1 RT 1: 205-2216 bp Neighborhood of RT #1 [205, 2216] PRK09409 RVT-GII Feature: gene Location: 205-1092 bp Ori: ONZ84688.1 Feature: domain Description: PRK09409 Location: 208-1075 bp Feature: domain Description: PRK094 09 Location: 208-1075 bp Feature: gene Location: 1084-1473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-14 29 bp Feature: gene Location: 1523-2216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII

Seq: MUVX01000263.1 Burkholderia cenocepacia strain VC6589 VC6589_contig-3000012, whole genome shotgun sequence (61376 bp)
Overview 1 RT 1: 55006-61371 bp Neighborhood of RT #1 [55006, 61376] MFS_SV2_like MscK RVT-GII GIIM COG3547 Feature: gene Location: 55006-56424 bp Ori: ONZ84809.1 Feature: domain Description: MFS_SV2_like Location: 55126-56377 bp Feature: domain Description: MFS_SV2_like Location: 5 5 126-5 6377 bp Feature: gene Location: 56873-59335 bp Ori: ONZ84810.1 Feature: domain Description: MscK Location: 56951-59294 bp Feature: domain Description: MscK Location: 5 695 1-5 9294 bp Feature: gene Location: 59479-60846 bp Ori: ONZ84811.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59812-60427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 9812-60427 bp Feature: domain Description: GIIM Note: maturase Location: 60487-60688 bp Feature: domain Description: GIIM Note: maturase Location: 60487-60688 bp Feature: gene Location: 61017-61376 bp Ori: ONZ84812.1 Feature: domain Description: COG3547 Location: 61032-61371 bp Feature: domain Description: COG35 47 Location: 61032-61371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUVX01000270.1 Burkholderia cenocepacia strain VC6589 VC6589_contig-2000013, whole genome shotgun sequence (89810 bp)
Overview 1 RT 1: 40663-45246 bp Neighborhood of RT #1 [40663, 45246] D RVT-GII Feature: gene Location: 40663-41733 bp Ori: ONZ84200.1 Feature: domain Description: D Location: 40717-41701 bp Feature: domain Description: D Location: 40717-41701 bp Feature: gene Location: 41921-42217 bp Feature: gene Location: 42345-43877 bp Ori: ONZ84202.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42756-43446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42756 -43446 bp Feature: gene Location: 44449-44868 bp Feature: gene Location: 45031-45246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVX01000225.1 Burkholderia cenocepacia strain VC6589 VC6589_contig-19000009, whole genome shotgun sequence (34359 bp)
Overview 1 RT 1: 1-4002 bp Neighborhood of RT #1 [1, 4016] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 1-360 bp Ori: ONZ89087.1 Feature: domain Description: COG3547 Location: 16-355 bp Feature: domain Description: COG3547 Location: 16-355 bp Feature: gene Location: 531-1898 bp Ori: ONZ89088.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-147 9 bp Feature: domain Description: GIIM Note: maturase Location: 1539-1740 bp Feature: domain Description: GIIM Note: maturase Location: 1539-17 40 bp Feature: gene Location: 2018-2983 bp Ori: ONZ89089.1 Feature: domain Description: GDP_MD_SDR_e Location: 2054-2951 bp Feature: domain Description: GDP_MD_SDR_e Location: 2054-2951 bp Feature: gene Location: 2970-4016 bp Ori: ONZ89090.1 Feature: domain Description: Gmd Location: 2985-4002 bp Feature: domain Description: Gmd Location: 2985-4002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)