myRT

myRT report for GCA_001995725.1_ASM199572v1

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Seq: MUEU01000002.1 Salinivibrio kushneri strain ML328A contig-100_1, whole genome shotgun sequence (280189 bp)
Overview 1 RT 1: 272390-275933 bp Neighborhood of RT #1 [272390, 276019] DUF2389 RVT-GII GIIM PQQ PQQ Feature: gene Location: 272390-272605 bp Feature: domain Description: DUF2389 Location: 272426-272603 bp Feature: domain Description: DUF2389 Location: 272426-272603 bp Feature: gene Location: 272525-272824 bp Feature: gene Location: 273379-274662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273592-274213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273592-27421 3 bp Feature: domain Description: GIIM Note: maturase Location: 274261-274483 bp Feature: domain Description: GIIM Note: maturase Location: 274261 -274483 bp Feature: gene Location: 274764-275459 bp Feature: gene Location: 275720-276019 bp Feature: domain Description: PQQ Location: 275753-275807 bp Feature: domain Description: PQQ Location: 275753-275807 bp Feature: domain Description: PQQ Location: 275840-275933 bp Feature: domain Description: PQQ Location: 275840-275933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2389 (pfam09493), RVT-GII, GIIM (pfam08388), PQQ (smart00564)

Seq: MUEU01000009.1 Salinivibrio kushneri strain ML328A contig-100_8, whole genome shotgun sequence (167390 bp)
Overview 1 RT 1: 159563-165464 bp Neighborhood of RT #1 [159563, 165472] PRK09730 DDE_Tnp_1_5 RVT-Retrons PHA02517 Feature: gene Location: 159563-160189 bp Feature: domain Description: PRK09730 Location: 159572-160184 bp Feature: domain Description: PRK09730 Location: 159572 -160184 bp Feature: gene Location: 160269-161186 bp Feature: domain Description: DDE_Tnp_1_5 Location: 160326-160659 bp Feature: domain Description: DDE_Tnp_1_5 Location: 16032 6-160659 bp Feature: gene Location: 161453-163390 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 161591-162275 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 161591-162 2 75 bp Feature: gene Location: 163805-164509 bp Feature: gene Location: 164666-165472 bp Feature: domain Description: PHA02517 Location: 164681-165464 bp Feature: domain Description: PHA02 517 Location: 164681-165464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09730 (SDR family oxidoreductase), DDE_Tnp_1_5 (pfam13737), RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed)