myRT

myRT report for GCA_001996185.1_ASM199618v1

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Seq: MUFR01000090.1 Salinivibrio costicola subsp. alcaliphilus strain DSM 19052 contig-100_89, whole genome shotgun sequence (1805 bp)
Overview 1 RT 1: 1-1556 bp Neighborhood of RT #1 [1, 1735] RVT-GII GIIM Feature: gene Location: 1-217 bp Feature: gene Location: 452-1735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665-1286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665-1 286 bp Feature: domain Description: GIIM Note: maturase Location: 1334-1556 bp Feature: domain Description: GIIM Note: maturase Location: 1 334-1 556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUFR01000019.1 Salinivibrio costicola subsp. alcaliphilus strain DSM 19052 contig-100_18, whole genome shotgun sequence (64447 bp)
Overview 1 RT 1: 56319-61666 bp Neighborhood of RT #1 [56319, 61848] guaA RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 56319-57896 bp Feature: domain Description: guaA Location: 56337-57894 bp Feature: domain Description: guaA Location: 56337-57894 bp Feature: gene Location: 57958-58138 bp Feature: gene Location: 58606-59538 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58708-59299 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58708-592 99 bp Feature: gene Location: 59531-61171 bp Feature: domain Description: COG3950 Location: 59735-61091 bp Feature: domain Description: COG3950 Location: 59735-61091 bp Feature: gene Location: 61177-61848 bp Feature: domain Description: TIGR02646 Location: 61273-61666 bp Feature: domain Description: TIGR02 646 Location: 612 73-61666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT guaA (PRK00074), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: MUFR01000027.1 Salinivibrio costicola subsp. alcaliphilus strain DSM 19052 contig-100_26, whole genome shotgun sequence (47724 bp)
Overview 1 RT 1: 37732-41824 bp Neighborhood of RT #1 [37732, 42363] PRK11056 RVT-GII GepA NT_Rel-Spo_like Feature: gene Location: 37732-38115 bp Feature: domain Description: PRK11056 Location: 37741-38089 bp Feature: domain Description: PRK11056 Location: 3 7741-3 8089 bp Feature: gene Location: 38306-38595 bp Feature: gene Location: 39018-40505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39387-40080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 93 87-40080 bp Feature: gene Location: 40682-41149 bp Feature: domain Description: GepA Location: 40700-41084 bp Feature: domain Description: GepA Location: 40700-41084 bp Feature: gene Location: 41146-42363 bp Feature: domain Description: NT_Rel-Spo_like Location: 41413-41824 bp Feature: domain Description: NT_Rel-Spo_like Location: 41413 -41824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11056 (YijD family membrane protein), RVT-GII, GepA (COG3600), NT_Rel-Spo_like (cd05399)