myRT

myRT report for GCA_001997325.1_ASM199732v1

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Seq: MTGH01000020.1 Bacteroides fragilis strain ATCC 25285 contig20, whole genome shotgun sequence (332172 bp)
Overview 1 RT 1: 105478-114436 bp Neighborhood of RT #1 [105478, 114444] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 105478-107667 bp Ori: OOD22637.1 Feature: domain Description: GlnA3 Location: 105553-107665 bp Feature: domain Description: GlnA3 Location: 1 05553-1 07665 bp Feature: gene Location: 107907-110126 bp Feature: gene Location: 110333-111445 bp Ori: OOD22639.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 110648-111197 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 0648-1 1 1 1 97 bp Feature: gene Location: 111587-113380 bp Ori: OOD22640.1 Feature: domain Description: rpsA Location: 111665-113273 bp Feature: domain Description: rpsA Location: 1 1 1 665-1 1 3273 bp Feature: gene Location: 113530-114444 bp Ori: OOD22641.1 Feature: domain Description: RNase_Z Location: 113545-114436 bp Feature: domain Description: RNase_Z Location: 1 1 3545-1 1 4436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: MTGH01000007.1 Bacteroides fragilis strain ATCC 25285 contig7, whole genome shotgun sequence (385727 bp)
Overview 1 RT 1: 126689-131697 bp Neighborhood of RT #1 [126689, 131697] NHL 7WD40 RVT_N RVT-GII RVT-GII HTH_28 Feature: gene Location: 126689-128056 bp Feature: gene Location: 128053-129108 bp Ori: OOD26845.1 Feature: domain Description: NHL Location: 128275-128641 bp Feature: domain Description: NHL Location: 12 82 75-12 8641 bp Feature: domain Description: 7WD40 Location: 128692-129073 bp Feature: domain Description: 7WD40 Location: 12 8692 -12 9073 bp Feature: gene Location: 129931-130308 bp Ori: OOD26846.1 Feature: domain Description: RVT_N Location: 129934-130159 bp Feature: domain Description: RVT_N Location: 12 9934-130159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130213-130282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1302 13-1302 82 bp Feature: gene Location: 130286-130483 bp Ori: OOD26847.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130289-130481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1302 89-130481 bp Feature: gene Location: 130604-130894 bp Ori: OOD26848.1 Feature: domain Description: HTH_28 Location: 130628-130775 bp Feature: domain Description: HTH_2 8 Location: 13062 8-130775 bp Feature: gene Location: 131323-131697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), 7WD40 (sd00039), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518)

Seq: MTGH01000021.1 Bacteroides fragilis strain ATCC 25285 contig21, whole genome shotgun sequence (40305 bp)
Overview 1 RT 1: 21823-28554 bp Neighborhood of RT #1 [21823, 28601] SLATT_5 COG2865 RVT-UG5 Gph LbH_MAT_GAT Feature: gene Location: 21823-22551 bp Ori: OOD22495.1 Feature: domain Description: SLATT_5 Location: 21949-22516 bp Feature: domain Description: SLATT_5 Location: 21949-22516 bp Feature: gene Location: 22712-24091 bp Ori: OOD22496.1 Feature: domain Description: COG2865 Location: 22724-24080 bp Feature: domain Description: COG2865 Location: 22724-24080 bp Feature: gene Location: 24096-27098 bp Ori: OOD22497.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24624-25110 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24624-25110 bp Feature: gene Location: 27362-28000 bp Ori: OOD22498.1 Feature: domain Description: Gph Location: 27365-27992 bp Feature: domain Description: Gph Location: 273 65-27992 bp Feature: gene Location: 27978-28601 bp Ori: OOD22499.1 Feature: domain Description: LbH_MAT_GAT Location: 28017-28554 bp Feature: domain Description: LbH_MAT_GAT Location: 28017-28554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG5, Gph (COG0546), LbH_MAT_GAT (cd03357)

Seq: MTGH01000019.1 Bacteroides fragilis strain ATCC 25285 contig19, whole genome shotgun sequence (272812 bp)
Overview 1 RT 1: 30291-35645 bp Neighborhood of RT #1 [30291, 35677] DUF3876 HTH_17 RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like AAT_like Feature: gene Location: 30291-30593 bp Ori: OOD23291.1 Feature: domain Description: DUF3876 Location: 30318-30588 bp Feature: domain Description: DUF3876 Location: 30318-30588 bp Feature: gene Location: 30653-30946 bp Ori: OOD23292.1 Feature: domain Description: HTH_17 Location: 30776-30920 bp Feature: domain Description: HTH_17 Location: 30776-30920 bp Feature: gene Location: 31790-32638 bp Ori: OOD23293.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31949-32471 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3194 9-324 71 bp Feature: gene Location: 32647-33870 bp Ori: OOD23294.1 Feature: domain Description: Arm-DNA-bind_5 Location: 32686-32947 bp Feature: domain Description: Arm-DNA-bind_5 Location: 32686-3294 7 bp Feature: domain Description: Phage_int_SAM_5 Location: 32986-33289 bp Feature: domain Description: Phage_int_SAM_5 Location: 32986-33289 bp Feature: domain Description: INTN1_C_like Location: 33340-33829 bp Feature: domain Description: INTN1_C_like Location: 3334 0-33829 bp Feature: gene Location: 34361-35677 bp Ori: OOD23295.1 Feature: domain Description: AAT_like Location: 34502-35645 bp Feature: domain Description: AAT_like Location: 34 502-3564 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), HTH_17 (pfam12728), RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), AAT_like (cd00609)