myRT

myRT report for GCA_001999805.1_ASM199980v1

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Seq: CP019666.1 Burkholderia cenocepacia strain VC2307 chromosome 1 sequence (6028390 bp)
Overview 1 RT 1: 1142888-1147496 bp 2 RT 2: 1537479-1543693 bp 3 RT 3: 1776893-1781214 bp 4 RT 4: 2182594-2189614 bp 5 RT 5: 2796084-2800473 bp 6 RT 6: 5872615-5878669 bp Neighborhood of RT #1 [1142888, 1147504] COG3547 RVT-GII GIIM RsmI PRK14673 Neighborhood of RT #2 [1537479, 1543734] COG3547 RVT-GII GIIM RpiR PRK09054 Neighborhood of RT #3 [1776893, 1781222] COG3547 RVT-GII GIIM COG4315 PRK12511 Neighborhood of RT #4 [2182594, 2189614] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Neighborhood of RT #5 [2796084, 2800496] Dcm Dcm RVT-DGRs Avd_like DUF1566 Neighborhood of RT #6 [5872615, 5878722] HATPase_c_3 RVT-UG5 Tra5 HTH_Tnp_1 Feature: gene Location: 1142888-1143082 bp Feature: gene Location: 1143462-1144496 bp Ori: AQQ18772.1 Feature: domain Description: COG3547 Location: 1143477-1144440 bp Feature: domain Description: COG3547 Location: 1 1 43477-1 1 44440 bp Feature: gene Location: 1144667-1146034 bp Ori: AQQ18773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1145000-1145615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 45000-1 1 4561 5 bp Feature: domain Description: GIIM Note: maturase Location: 1145675-1145876 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 45675-1 1 45876 bp Feature: gene Location: 1146142-1147029 bp Ori: AQQ18774.1 Feature: domain Description: RsmI Location: 1146190-1147003 bp Feature: domain Description: RsmI Location: 1 1 461 90-1 1 47003 bp Feature: gene Location: 1147028-1147504 bp Ori: AQQ18775.1 Feature: domain Description: PRK14673 Location: 1147079-1147496 bp Feature: domain Description: PRK1 4673 Location: 1 1 47079-1 1 47496 bp Feature: gene Location: 1537479-1537673 bp Feature: gene Location: 1538053-1539087 bp Ori: AQQ19124.1 Feature: domain Description: COG3547 Location: 1538068-1539031 bp Feature: domain Description: COG3547 Location: 1 538068-1 539031 bp Feature: gene Location: 1539258-1540625 bp Ori: AQQ19125.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539591-1540206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 539591 -1 540206 bp Feature: domain Description: GIIM Note: maturase Location: 1540266-1540467 bp Feature: domain Description: GIIM Note: maturase Location: 1 540266-1 540467 bp Feature: gene Location: 1540735-1541583 bp Ori: AQQ19126.1 Feature: domain Description: RpiR Location: 1540738-1541560 bp Feature: domain Description: RpiR Location: 1 540738-1 541 560 bp Feature: gene Location: 1541878-1543734 bp Ori: AQQ19127.1 Feature: domain Description: PRK09054 Location: 1541890-1543693 bp Feature: domain Description: PRK09054 Location: 1 541 890-1 543693 bp Feature: gene Location: 1776893-1777087 bp Feature: gene Location: 1777467-1778501 bp Ori: AQQ19312.1 Feature: domain Description: COG3547 Location: 1777482-1778445 bp Feature: domain Description: COG3547 Location: 1 777482-1 778445 bp Feature: gene Location: 1778672-1780039 bp Ori: AQQ19313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1779005-1779620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 779005-1 779620 bp Feature: domain Description: GIIM Note: maturase Location: 1779680-1779881 bp Feature: domain Description: GIIM Note: maturase Location: 1 779680-1 779881 bp Feature: gene Location: 1780320-1780679 bp Ori: AQQ19314.1 Feature: domain Description: COG4315 Location: 1780341-1780677 bp Feature: domain Description: COG431 5 Location: 1 780341 -1 780677 bp Feature: gene Location: 1780707-1781222 bp Ori: AQQ19315.1 Feature: domain Description: PRK12511 Location: 1780719-1781214 bp Feature: domain Description: PRK1 251 1 Location: 1 78071 9-1 781 21 4 bp Feature: gene Location: 2182594-2183259 bp Feature: domain Description: GIIM Note: maturase Location: 2182597-2182822 bp Feature: domain Description: GIIM Note: maturase Location: 21 82597-21 82822 bp Feature: domain Description: HNHc Note: nucleases Location: 2183056-2183212 bp Feature: domain Description: HNHc Note: nucleases Location: 21 83056-21 8321 2 bp Feature: gene Location: 2183405-2186320 bp Ori: AQQ19694.1 Feature: domain Description: DUF4158 Location: 2183444-2183909 bp Feature: domain Description: DUF41 58 Location: 21 83444-21 83909 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2185097-2186243 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 21 85097-21 86243 bp Feature: gene Location: 2186451-2187521 bp Feature: domain Description: RVT_N Location: 2186508-2186745 bp Feature: domain Description: RVT_N Location: 21 86508-21 86745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2186796-2187447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 86796-21 87447 bp Feature: gene Location: 2188117-2189172 bp Ori: AQQ19695.1 Feature: domain Description: DEXHc_Snf Location: 2188336-2188591 bp Feature: domain Description: DEXHc_Snf Location: 21 88336-21 88591 bp Feature: gene Location: 2189309-2189614 bp Feature: gene Location: 2796084-2796344 bp Feature: gene Location: 2796359-2798260 bp Ori: AQQ23075.1 Feature: domain Description: Dcm Location: 2796392-2796998 bp Feature: domain Description: Dcm Location: 2796392-2796998 bp Feature: domain Description: Dcm Location: 2797997-2798156 bp Feature: domain Description: Dcm Location: 2797997-27981 56 bp Feature: gene Location: 2798319-2799317 bp Ori: AQQ20211.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2798412-2799099 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 279841 2-2799099 bp Feature: gene Location: 2799661-2800017 bp Ori: AQQ20212.1 Feature: domain Description: Avd_like Location: 2799688-2799994 bp Feature: domain Description: Avd_like Location: 2799688-2799994 bp Feature: gene Location: 2800032-2800496 bp Ori: AQQ20213.1 Feature: domain Description: DUF1566 Location: 2800293-2800473 bp Feature: domain Description: DUF1 566 Location: 2800293-2800473 bp Feature: gene Location: 5872615-5873304 bp Feature: gene Location: 5873556-5875571 bp Ori: AQQ22773.1 Feature: domain Description: HATPase_c_3 Location: 5873625-5873949 bp Feature: domain Description: HATPase_c_3 Location: 5873625-5873949 bp Feature: gene Location: 5876099-5877553 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5876108-5876582 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 58761 08-5876582 bp Feature: gene Location: 5877602-5878435 bp Ori: AQQ22774.1 Feature: domain Description: Tra5 Location: 5877623-5878403 bp Feature: domain Description: Tra5 Location: 5877623-5878403 bp Feature: gene Location: 5878459-5878722 bp Ori: AQQ22775.1 Feature: domain Description: HTH_Tnp_1 Location: 5878465-5878669 bp Feature: domain Description: HTH_Tnp_1 Location: 5878465-5878669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional), RpiR (COG1737), PRK09054 (phosphogluconate dehydratase; Validated), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional), HNHc (smart00507)
DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), DEXHc_Snf (cd17919), Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), HATPase_c_3 (pfam13589), RVT-UG5
Tra5 (COG2801), HTH_Tnp_1 (pfam01527)

Seq: CP019667.1 Burkholderia cenocepacia strain VC2307 chromosome 3, complete sequence (974315 bp)
Overview 1 RT 1: 861190-865005 bp Neighborhood of RT #1 [861190, 865010] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 861190-861519 bp Ori: AQQ23973.1 Feature: domain Description: Histone_HNS Location: 861211-861448 bp Feature: domain Description: Histone_HNS Location: 8612 11-861448 bp Feature: gene Location: 861666-861872 bp Feature: gene Location: 861845-863194 bp Ori: AQQ23975.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 862310-862946 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 862 310-862 946 bp Feature: gene Location: 863448-864020 bp Ori: AQQ23976.1 Feature: domain Description: FIN Location: 863634-863985 bp Feature: domain Description: FIN Location: 863634-863985 bp Feature: gene Location: 864255-865010 bp Ori: AQQ23977.1 Feature: domain Description: his_ut_repres Location: 864333-865005 bp Feature: domain Description: his_ut_repres Location: 864333-865005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)