myRT

myRT report for GCA_001999925.1_ASM199992v1

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Seq: CP019676.1 Burkholderia cenocepacia strain VC1254 chromosome 2, complete sequence (3156709 bp)
Overview 1 RT 1: 843102-850036 bp Neighborhood of RT #1 [843102, 850224] PRK09409 RVT-UG5 IS285 HTH_29 rve Feature: gene Location: 843102-843938 bp Ori: AQQ45920.1 Feature: domain Description: PRK09409 Location: 843114-843924 bp Feature: domain Description: PRK09409 Location: 8431 1 4-843924 bp Feature: gene Location: 843979-845001 bp Feature: gene Location: 845067-848060 bp Ori: AQQ47847.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 845538-846012 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 845538-84601 2 bp Feature: gene Location: 848245-849141 bp Feature: domain Description: IS285 Location: 848299-849094 bp Feature: domain Description: IS285 Location: 848299-849094 bp Feature: gene Location: 849187-850224 bp Ori: AQQ45922.1 Feature: domain Description: HTH_29 Location: 849226-849406 bp Feature: domain Description: HTH_29 Location: 849226-849406 bp Feature: domain Description: rve Location: 849673-850036 bp Feature: domain Description: rve Location: 849673-850036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-UG5, IS285 (COG3328), HTH_29 (pfam13551), rve (pfam00665)

Seq: CP019675.1 Burkholderia cenocepacia strain VC1254 chromosome 3 sequence (1011214 bp)
Overview 1 RT 1: 812446-816195 bp Neighborhood of RT #1 [812446, 816266] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 812446-813201 bp Ori: AQQ44952.1 Feature: domain Description: his_ut_repres Location: 812524-813196 bp Feature: domain Description: his_ut_repres Location: 812 52 4-813196 bp Feature: gene Location: 813436-814008 bp Ori: AQQ44953.1 Feature: domain Description: FIN Location: 813622-813973 bp Feature: domain Description: FIN Location: 81362 2 -813973 bp Feature: gene Location: 814262-815611 bp Ori: AQQ44954.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 814727-815363 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81472 7-815363 bp Feature: gene Location: 815584-815790 bp Feature: gene Location: 815937-816266 bp Ori: AQQ44956.1 Feature: domain Description: Histone_HNS Location: 815958-816195 bp Feature: domain Description: Histone_HNS Location: 815958-816195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: CP019678.1 Burkholderia cenocepacia strain VC1254 chromosome 1, complete sequence (3818057 bp)
Overview 1 RT 1: 145322-150765 bp 2 RT 2: 160477-165260 bp 3 RT 3: 593563-598900 bp 4 RT 4: 835016-842008 bp 5 RT 5: 3697722-3706099 bp Neighborhood of RT #1 [145322, 150767] YvlD fadh2 RVT-GII GIIM GatA DLH Neighborhood of RT #2 [160477, 165286] RlpA RVT-GII GIIM IS285 RsmI Neighborhood of RT #3 [593563, 598941] COG1981 RVT-GII GIIM RpiR PRK09054 Neighborhood of RT #4 [835016, 842010] RVT-GII GIIM IS285 COG4315 Neighborhood of RT #5 [3697722, 3706320] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 145322-145675 bp Ori: AQQ48301.1 Feature: domain Description: YvlD Location: 145325-145655 bp Feature: domain Description: YvlD Location: 1453 25-145655 bp Feature: gene Location: 145706-146536 bp Ori: AQQ48302.1 Feature: domain Description: fadh2 Location: 145724-146528 bp Feature: domain Description: fadh2 Location: 145724-146528 bp Feature: gene Location: 147009-148406 bp Ori: AQQ48303.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147342-147960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1473 42-147960 bp Feature: domain Description: GIIM Note: maturase Location: 148011-148221 bp Feature: domain Description: GIIM Note: maturase Location: 148011-148221 bp Feature: gene Location: 148516-149994 bp Ori: AQQ51501.1 Feature: domain Description: GatA Location: 148543-149971 bp Feature: domain Description: GatA Location: 148543 -149971 bp Feature: gene Location: 150075-150767 bp Ori: AQQ48304.1 Feature: domain Description: DLH Location: 150087-150765 bp Feature: domain Description: DLH Location: 150087-150765 bp Feature: gene Location: 160477-161088 bp Ori: AQQ48313.1 Feature: domain Description: RlpA Location: 160549-161053 bp Feature: domain Description: RlpA Location: 160549-161053 bp Feature: gene Location: 161146-161475 bp Feature: gene Location: 161546-162823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161879-162494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161879-162494 bp Feature: domain Description: GIIM Note: maturase Location: 162554-162755 bp Feature: domain Description: GIIM Note: maturase Location: 162554-162755 bp Feature: gene Location: 162882-164150 bp Ori: AQQ48315.1 Feature: domain Description: IS285 Location: 162966-164136 bp Feature: domain Description: IS285 Location: 162966-16413 6 bp Feature: gene Location: 164399-165286 bp Ori: AQQ48316.1 Feature: domain Description: RsmI Location: 164447-165260 bp Feature: domain Description: RsmI Location: 164447-165260 bp Feature: gene Location: 593563-593979 bp Ori: AQQ48699.1 Feature: domain Description: COG1981 Location: 593566-593977 bp Feature: domain Description: COG1981 Location: 593 566-593 977 bp Feature: gene Location: 594065-594394 bp Feature: gene Location: 594465-595832 bp Ori: AQQ48700.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594798-595413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594798-595413 bp Feature: domain Description: GIIM Note: maturase Location: 595473-595674 bp Feature: domain Description: GIIM Note: maturase Location: 595473 -595674 bp Feature: gene Location: 595942-596790 bp Ori: AQQ48701.1 Feature: domain Description: RpiR Location: 595945-596767 bp Feature: domain Description: RpiR Location: 595945-596767 bp Feature: gene Location: 597085-598941 bp Ori: AQQ48702.1 Feature: domain Description: PRK09054 Location: 597097-598900 bp Feature: domain Description: PRK09054 Location: 597097-598900 bp Feature: gene Location: 835016-838096 bp Feature: gene Location: 838226-838555 bp Feature: gene Location: 838626-839924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838959-839574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 8959-83 9574 bp Feature: domain Description: GIIM Note: maturase Location: 839634-839835 bp Feature: domain Description: GIIM Note: maturase Location: 83 963 4-83 983 5 bp Feature: gene Location: 839951-841219 bp Ori: AQQ48901.1 Feature: domain Description: IS285 Location: 840035-841205 bp Feature: domain Description: IS285 Location: 84003 5-841205 bp Feature: gene Location: 841651-842010 bp Ori: AQQ51531.1 Feature: domain Description: COG4315 Location: 841672-842008 bp Feature: domain Description: COG43 15 Location: 841672-842008 bp Feature: gene Location: 3697722-3698828 bp Ori: AQQ51403.1 Feature: domain Description: PRK05643 Location: 3697734-3698826 bp Feature: domain Description: PRK05643 Location: 3 69773 4-3 698826 bp Feature: gene Location: 3699021-3701495 bp Ori: AQQ51404.1 Feature: domain Description: gyrB Location: 3699051-3701493 bp Feature: domain Description: gyrB Location: 3 699051-3 701493 bp Feature: gene Location: 3701921-3703672 bp Ori: AQQ51405.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3702056-3702698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 702056-3 702698 bp Feature: gene Location: 3703767-3705488 bp Ori: AQQ51406.1 Feature: domain Description: YjgR Location: 3704250-3704514 bp Feature: domain Description: YjgR Location: 3 704250-3 704514 bp Feature: domain Description: YjgR Location: 3705009-3705411 bp Feature: domain Description: YjgR Location: 3 705009-3 705411 bp Feature: gene Location: 3705481-3706320 bp Ori: AQQ51407.1 Feature: domain Description: SIR2_2 Location: 3705655-3706099 bp Feature: domain Description: SIR2_2 Location: 3 705655-3 706099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154), DLH (pfam01738), RlpA (COG0797), IS285 (COG3328), RsmI (COG0313), COG1981 (Uncharacterized membrane protein )
RpiR (COG1737), PRK09054 (phosphogluconate dehydratase; Validated), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)