myRT

myRT report for GCA_002001535.1_ASM200153v1

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Seq: MDZI01000011.1 Escherichia coli strain 18.1-R1 NODE_11_length_147281_cov_18.9345, whole genome shotgun sequence (147281 bp)
Overview 1 RT 1: 125421-132566 bp Neighborhood of RT #1 [125421, 132574] Phage_GPA RVT-Retrons FRG Q Feature: gene Location: 125421-127709 bp Ori: OOI20798.1 Feature: domain Description: Phage_GPA Location: 125820-126807 bp Feature: domain Description: Phage_GPA Location: 1 25820-1 26807 bp Feature: gene Location: 127988-128281 bp Feature: gene Location: 128604-129554 bp Ori: OOI20823.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128784-129327 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 28784-1 29327 bp Feature: gene Location: 129663-131027 bp Ori: OOI20800.1 Feature: domain Description: FRG Location: 130230-130515 bp Feature: domain Description: FRG Location: 1 30230-1 3051 5 bp Feature: gene Location: 131540-132574 bp Ori: OOI20801.1 Feature: domain Description: Q Location: 131543-132566 bp Feature: domain Description: Q Location: 1 31 543-1 32566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-Retrons, FRG (smart00901), Q (PHA02536)

Seq: MDZI01000115.1 Escherichia coli strain 18.1-R1 NODE_115_length_2329_cov_23.9587, whole genome shotgun sequence (2329 bp)
Overview 1 RT 1: 168-2193 bp Neighborhood of RT #1 [168, 2193] YhhI RVT-GII GIIM Feature: gene Location: 168-428 bp Ori: OOI10925.1 Feature: domain Description: YhhI Location: 243-414 bp Feature: domain Description: YhhI Location: 2 43-414 bp Feature: gene Location: 439-1689 bp Ori: OOI10926.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643-1300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643-1300 bp Feature: domain Description: GIIM Note: maturase Location: 1381-1603 bp Feature: domain Description: GIIM Note: maturase Location: 1381-1603 bp Feature: gene Location: 2053-2193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: MDZI01000116.1 Escherichia coli strain 18.1-R1 NODE_116_length_2272_cov_138.281, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1601 bp Ori: OOI10914.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 51-1083 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1158-13 56 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)