myRT

myRT report for GCA_002001715.1_ASM200171v1

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Seq: MPAD01000025.1 Escherichia coli strain 3.6-R5 NODE_25_length_76033_cov_35.7654, whole genome shotgun sequence (76033 bp)
Overview 1 RT 1: 61635-66844 bp Neighborhood of RT #1 [61635, 67026] PinE RVT-GII RVT-GII RVT-GII PRK09413 lnt Feature: gene Location: 61635-62192 bp Ori: OOK11657.1 Feature: domain Description: PinE Location: 61638-62187 bp Feature: domain Description: PinE Location: 61 638-621 87 bp Feature: gene Location: 62292-62693 bp Feature: gene Location: 62902-63536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62905-63130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62905-631 30 bp Feature: gene Location: 63486-63770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63489-63765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63489-63765 bp Feature: gene Location: 63834-64247 bp Ori: OOK11659.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64155-64242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641 55-64242 bp Feature: gene Location: 64759-64920 bp Feature: domain Description: PRK09413 Location: 64762-64921 bp Feature: domain Description: PRK0941 3 Location: 64762-64921 bp Feature: gene Location: 65815-67026 bp Ori: OOK11660.1 Feature: domain Description: lnt Location: 65914-66844 bp Feature: domain Description: lnt Location: 6591 4-66844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PRK09413 (IS2 repressor TnpA; Reviewed), lnt (TIGR00546)

Seq: MPAD01000001.1 Escherichia coli strain 3.6-R5 NODE_1_length_310150_cov_20.8547, whole genome shotgun sequence (310150 bp)
Overview 1 RT 1: 290653-295967 bp Neighborhood of RT #1 [290653, 295972] RVT-GII RVT-GII GIIM LacI PBP1_GntR PtsN Feature: gene Location: 290653-290997 bp Feature: gene Location: 291207-291545 bp Feature: gene Location: 292442-292876 bp Ori: OOK18420.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292634-292850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 634-2 92 850 bp Feature: gene Location: 292894-293700 bp Ori: OOK18419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292897-293260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 897-2 932 60 bp Feature: domain Description: GIIM Note: maturase Location: 293308-293530 bp Feature: domain Description: GIIM Note: maturase Location: 2 93308-2 93530 bp Feature: gene Location: 294227-295258 bp Ori: OOK18393.1 Feature: domain Description: LacI Location: 294269-294404 bp Feature: domain Description: LacI Location: 2 942 69-2 94404 bp Feature: domain Description: PBP1_GntR Location: 294443-295253 bp Feature: domain Description: PBP1_GntR Location: 2 94443-2 952 53 bp Feature: gene Location: 295529-295972 bp Ori: OOK18394.1 Gene: cmtB Feature: domain Description: PtsN Location: 295532-295967 bp Feature: domain Description: PtsN Location: 2 95532 -2 95967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575), PtsN (COG1762)

Seq: MPAD01000048.1 Escherichia coli strain 3.6-R5 NODE_48_length_21045_cov_19.9582, whole genome shotgun sequence (21045 bp)
Overview 1 RT 1: 14449-17300 bp Neighborhood of RT #1 [14449, 17362] PHA02517 RVT-GII GIIM CE4_Ecf1_like_5s CE4_Ecf1_like_5s Feature: gene Location: 14449-14706 bp Feature: gene Location: 14789-15277 bp Feature: domain Description: PHA02517 Location: 14792-15257 bp Feature: domain Description: PHA02517 Location: 14792-15257 bp Feature: gene Location: 15358-16155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15433-15637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1543 3 -1563 7 bp Feature: domain Description: GIIM Note: maturase Location: 15712-15931 bp Feature: domain Description: GIIM Note: maturase Location: 15712-1593 1 bp Feature: gene Location: 16187-16303 bp Feature: gene Location: 16571-17362 bp Ori: OOK09066.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 16619-17015 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 16619-17015 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 17021-17300 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 17021-173 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), CE4_Ecf1_like_5s (cd10969)