myRT

myRT report for GCA_002001975.1_ASM200197v1

Download annotations/find similar RTs

Seq: MOZG01000117.1 Escherichia coli strain 4-R1 NODE_117_length_2749_cov_40.2073, whole genome shotgun sequence (2749 bp)
Overview 1 RT 1: 572-2504 bp Neighborhood of RT #1 [572, 2749] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 572-976 bp Ori: OOI99420.1 Feature: domain Description: InsE Location: 602-938 bp Feature: domain Description: InsE Location: 602-938 bp Feature: gene Location: 1005-1394 bp Feature: domain Description: PHA02517 Location: 1008-1350 bp Feature: domain Description: PHA0251 7 Location: 1 008-1 350 bp Feature: gene Location: 1478-2749 bp Ori: OOI99421.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499-2231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 499-2231 bp Feature: domain Description: GIIM Note: maturase Location: 2306-2504 bp Feature: domain Description: GIIM Note: maturase Location: 2306-2504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MOZG01000001.1 Escherichia coli strain 4-R1 NODE_1_length_261569_cov_18.8569, whole genome shotgun sequence (261569 bp)
Overview 1 RT 1: 127705-133736 bp Neighborhood of RT #1 [127705, 133873] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 127705-127845 bp Ori: OOJ10517.1 Feature: domain Description: SfsB Location: 127714-127786 bp Feature: domain Description: SfsB Location: 12 7714-12 7786 bp Feature: gene Location: 127842-128312 bp Feature: gene Location: 128659-131868 bp Ori: OOJ10519.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 129187-129676 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 12 9187-12 9676 bp Feature: domain Description: nitrilase Location: 131182-131779 bp Feature: domain Description: nitrilase Location: 131182 -131779 bp Feature: gene Location: 132184-132966 bp Ori: OOJ10520.1 Feature: domain Description: AbiEi_3_N Location: 132196-132457 bp Feature: domain Description: AbiEi_3_N Location: 132 196-132 457 bp Feature: domain Description: AbiEi_3 Location: 132469-132925 bp Feature: domain Description: AbiEi_3 Location: 132 469-132 92 5 bp Feature: gene Location: 132953-133873 bp Ori: OOJ10521.1 Feature: domain Description: AbiEii Location: 132995-133736 bp Feature: domain Description: AbiEii Location: 132 995-133736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: MOZG01000071.1 Escherichia coli strain 4-R1 NODE_71_length_11665_cov_29.8602, whole genome shotgun sequence (11665 bp)
Overview 1 RT 1: 1-1027 bp Neighborhood of RT #1 [1, 1035] RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-252 bp Ori: OOJ00993.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: gene Location: 291-611 bp Ori: OOJ00994.1 Feature: domain Description: PRK10173 Location: 294-522 bp Feature: domain Description: PRK10173 Location: 294-522 bp Feature: gene Location: 586-1035 bp Ori: OOJ00995.1 Feature: domain Description: PRK10173 Location: 589-1027 bp Feature: domain Description: PRK10173 Location: 589-1027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)