myRT

myRT report for GCA_002002465.1_ASM200246v1

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Seq: MOZO01000061.1 Escherichia coli strain 2.1-R1 NODE_61_length_2669_cov_105.64, whole genome shotgun sequence (2669 bp)
Overview 1 RT 1: 155-1961 bp Neighborhood of RT #1 [155, 2056] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 155-2056 bp Ori: OOJ38891.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1 253 bp Feature: domain Description: Intron_maturas2 Location: 1367-1625 bp Feature: domain Description: Intron_maturas2 Location: 1 367-1 625 bp Feature: domain Description: HNHc Note: nucleases Location: 1799-1961 bp Feature: domain Description: HNHc Note: nucleases Location: 1 799-1 961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MOZO01000017.1 Escherichia coli strain 2.1-R1 NODE_17_length_102025_cov_18.0683, whole genome shotgun sequence (102025 bp)
Overview 1 RT 1: 50-2883 bp Neighborhood of RT #1 [50, 2883] RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 50-1420 bp Ori: OOJ40066.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 311-767 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 311-767 bp Feature: gene Location: 1522-2559 bp Ori: OOJ40067.1 Feature: domain Description: HTH_29 Location: 1618-1789 bp Feature: domain Description: HTH_2 9 Location: 1618-1789 bp Feature: domain Description: HTH_33 Location: 1822-1984 bp Feature: domain Description: HTH_33 Location: 182 2 -1984 bp Feature: domain Description: DDE_3 Location: 2026-2455 bp Feature: domain Description: DDE_3 Location: 2 02 6-2 455 bp Feature: gene Location: 2497-2883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: MOZO01000023.1 Escherichia coli strain 2.1-R1 NODE_23_length_54681_cov_29.4102, whole genome shotgun sequence (54681 bp)
Overview 1 RT 1: 1-1027 bp Neighborhood of RT #1 [1, 1035] RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-252 bp Ori: OOJ39554.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: gene Location: 291-611 bp Ori: OOJ39555.1 Feature: domain Description: PRK10173 Location: 294-522 bp Feature: domain Description: PRK10173 Location: 294-522 bp Feature: gene Location: 586-1035 bp Ori: OOJ39556.1 Feature: domain Description: PRK10173 Location: 589-1027 bp Feature: domain Description: PRK10173 Location: 589-1027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: MOZO01000054.1 Escherichia coli strain 2.1-R1 NODE_54_length_3615_cov_29.0235, whole genome shotgun sequence (3615 bp)
Overview 1 RT 1: 1438-3370 bp Neighborhood of RT #1 [1438, 3615] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1438-1842 bp Ori: OOJ38911.1 Feature: domain Description: InsE Location: 1468-1804 bp Feature: domain Description: InsE Location: 14 68-1804 bp Feature: gene Location: 1871-2260 bp Feature: domain Description: PHA02517 Location: 1874-2216 bp Feature: domain Description: PHA02517 Location: 1874 -2216 bp Feature: gene Location: 2344-3615 bp Ori: OOJ38912.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2365-3097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2365-3097 bp Feature: domain Description: GIIM Note: maturase Location: 3172-3370 bp Feature: domain Description: GIIM Note: maturase Location: 3172-3370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)