myRT

myRT report for GCA_002003545.1_ASM200354v1

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Seq: MUKM01000002.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP18802 ICMP18802_flsh_c2, whole genome shotgun sequence (183317 bp)
Overview 1 RT 1: 169694-175838 bp Neighborhood of RT #1 [169694, 175918] MscS RVT-Retrons DUF4427 Pentapeptide Pentapeptide Pentapeptide Feature: gene Location: 169694-170449 bp Ori: OOL00241.1 Feature: domain Description: MscS Location: 169754-170417 bp Feature: domain Description: MscS Location: 1 69754-1 7041 7 bp Feature: gene Location: 170972-172228 bp Feature: gene Location: 172390-173556 bp Ori: OOL00243.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 172645-173266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 72645-1 73266 bp Feature: gene Location: 173760-174983 bp Ori: OOL00244.1 Feature: domain Description: DUF4427 Location: 174678-174963 bp Feature: domain Description: DUF4427 Location: 1 74678-1 74963 bp Feature: gene Location: 175388-175918 bp Ori: OOL00245.1 Feature: domain Description: Pentapeptide Location: 175505-175616 bp Feature: domain Description: Pentapeptide Location: 1 75505-1 7561 6 bp Feature: domain Description: Pentapeptide Location: 175622-175727 bp Feature: domain Description: Pentapeptide Location: 1 75622-1 75727 bp Feature: domain Description: Pentapeptide Location: 175742-175838 bp Feature: domain Description: Pentapeptide Location: 1 75742-1 75838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MscS (COG0668), RVT-Retrons, DUF4427 (pfam14468), Pentapeptide (pfam00805)

Seq: MUKM01000096.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP18802 ICMP18802_flsh_c111, whole genome shotgun sequence (811 bp)
Overview 1 RT 1: 1-661 bp Neighborhood of RT #1 [1, 799] RVT-GII Feature: gene Location: 1-799 bp Ori: OOK92847.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46-661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46-661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUKM01000101.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP18802 ICMP18802_flsh_rep_c131, whole genome shotgun sequence (2021 bp)
Overview 1 RT 1: 1-1765 bp Neighborhood of RT #1 [1, 1899] RVT-GII GIIM Feature: gene Location: 1-215 bp Feature: gene Location: 155-484 bp Feature: gene Location: 532-1899 bp Ori: OOK92707.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1480 bp Feature: domain Description: GIIM Note: maturase Location: 1537-1765 bp Feature: domain Description: GIIM Note: maturase Location: 153 7-1765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUKM01000082.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP18802 ICMP18802_flsh_c84, whole genome shotgun sequence (6012 bp)
Overview 1 RT 1: 983-5571 bp Neighborhood of RT #1 [983, 5571] SIRT5_Af1_CobB RVT-UG15 Feature: gene Location: 983-1318 bp Feature: gene Location: 1573-2346 bp Ori: OOK92984.1 Feature: domain Description: SIRT5_Af1_CobB Location: 1621-2308 bp Feature: domain Description: SIRT5_Af1_CobB Location: 1621-2308 bp Feature: gene Location: 2633-3937 bp Ori: OOK92985.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2738-3149 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2738-314 9 bp Feature: gene Location: 5108-5365 bp Feature: gene Location: 5395-5571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIRT5_Af1_CobB (cd01412), RVT-UG15

Seq: MUKM01000003.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP18802 ICMP18802_flsh_c3, whole genome shotgun sequence (219783 bp)
Overview 1 RT 1: 1-1802 bp Neighborhood of RT #1 [1, 1802] RVT-GII GIIM Feature: gene Location: 1-1279 bp Ori: OOL00075.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: domain Description: GIIM Note: maturase Location: 1006-1234 bp Feature: domain Description: GIIM Note: maturase Location: 1006-1234 bp Feature: gene Location: 1327-1656 bp Feature: gene Location: 1596-1802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)