myRT

myRT report for GCA_002005105.1_14B

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Seq: MSCV01000012.1 Methylocaldum sp. 14B contig00012, whole genome shotgun sequence (151313 bp)
Overview 1 RT 1: 80779-85130 bp Neighborhood of RT #1 [80779, 85132] RVT-GII GIIM PRK07883 Imm-NTF2-2 Feature: gene Location: 80779-81207 bp Feature: gene Location: 81325-81618 bp Feature: gene Location: 82179-83513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82458-83076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82458-83076 bp Feature: domain Description: GIIM Note: maturase Location: 83121-83316 bp Feature: domain Description: GIIM Note: maturase Location: 831 21 -8331 6 bp Feature: gene Location: 83632-84240 bp Feature: domain Description: PRK07883 Location: 83713-84229 bp Feature: domain Description: PRK07883 Location: 8371 3-84229 bp Feature: gene Location: 84812-85132 bp Feature: domain Description: Imm-NTF2-2 Location: 84932-85130 bp Feature: domain Description: Imm-NTF2-2 Location: 84932-851 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK07883 (DEDD exonuclease domain-containing protein), Imm-NTF2-2 (pfam15631)

Seq: MSCV01000030.1 Methylocaldum sp. 14B contig00030, whole genome shotgun sequence (76985 bp)
Overview 1 RT 1: 7041-13052 bp Neighborhood of RT #1 [7041, 13435] DUF4389 DUF2127 RVT_N RVT-GII GIIM HNHc PRK13517 PRK13517 M14_ASTE_ASPA-like Feature: gene Location: 7041-7322 bp Feature: domain Description: DUF4389 Location: 7080-7299 bp Feature: domain Description: DUF4389 Location: 7080-72 99 bp Feature: gene Location: 7406-8035 bp Feature: domain Description: DUF2127 Location: 7583-7985 bp Feature: domain Description: DUF2 12 7 Location: 7583-7985 bp Feature: gene Location: 8219-9886 bp Feature: domain Description: RVT_N Location: 8270-8513 bp Feature: domain Description: RVT_N Location: 82 70-8513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8558-9197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8558-9197 bp Feature: domain Description: GIIM Note: maturase Location: 9251-9482 bp Feature: domain Description: GIIM Note: maturase Location: 92 51-9482 bp Feature: domain Description: HNHc Note: nucleases Location: 9671-9839 bp Feature: domain Description: HNHc Note: nucleases Location: 9671-9839 bp Feature: gene Location: 10983-12410 bp Feature: domain Description: PRK13517 Location: 11118-11724 bp Feature: domain Description: PRK13517 Location: 11118-1172 4 bp Feature: domain Description: PRK13517 Location: 11964-12333 bp Feature: domain Description: PRK13517 Location: 11964-12 333 bp Feature: gene Location: 12398-13435 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 12437-13052 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 12 437-13052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4389 (pfam14333), DUF2127 (pfam09900), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13517 (glutamate--cysteine ligase), M14_ASTE_ASPA-like (cd06910)

Seq: MSCV01000051.1 Methylocaldum sp. 14B contig00051, whole genome shotgun sequence (23189 bp)
Overview 1 RT 1: 370-6186 bp Neighborhood of RT #1 [370, 6186] Cas2_I_II_III CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III DUF1887 Feature: gene Location: 370-507 bp Feature: gene Location: 1279-1557 bp Feature: domain Description: Cas2_I_II_III Location: 1291-1513 bp Feature: domain Description: Cas2_I_II_III Location: 1291-1513 bp Feature: gene Location: 1554-4694 bp Feature: domain Description: CRISPR_Cas6 Location: 2349-2607 bp Feature: domain Description: CRISPR_Cas6 Location: 23 49-2607 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2889-3489 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2889-3 489 bp Feature: domain Description: Cas1_I-II-III Location: 3717-4656 bp Feature: domain Description: Cas1_I-II-III Location: 3 717-4656 bp Feature: gene Location: 4817-5554 bp Feature: domain Description: DUF1887 Location: 4997-5288 bp Feature: domain Description: DUF1887 Location: 4997-5288 bp Feature: gene Location: 5572-6186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF1887 (pfam09002)