myRT

myRT report for GCA_002005125.1_ASM200512v1

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Seq: MPIP01000085.1 Pseudomonas sp. FSL W5-0299 NODE_85_length_2399_cov_4.66826_ID_8322, whole genome shotgun sequence (2399 bp)
Overview 1 RT 1: 72-2373 bp Neighborhood of RT #1 [72, 2372] RVT-GII GIIM IS5 Feature: gene Location: 72-1340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-942 bp Feature: domain Description: GIIM Note: maturase Location: 1020-1242 bp Feature: domain Description: GIIM Note: maturase Location: 1 020-1 242 bp Feature: gene Location: 1860-2372 bp Feature: domain Description: IS5 Location: 2049-2373 bp Feature: domain Description: IS5 Location: 2049-2373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: MPIP01000030.1 Pseudomonas sp. FSL W5-0299 NODE_30_length_71181_cov_1.33543_ID_8210, whole genome shotgun sequence (71181 bp)
Overview 1 RT 1: 62910-66896 bp Neighborhood of RT #1 [62910, 66896] Acetyltransf_1 CSP_CDS RVT-Retrons Feature: gene Location: 62910-63395 bp Feature: domain Description: Acetyltransf_1 Location: 63066-63309 bp Feature: domain Description: Acetyltransf_1 Location: 63066-63309 bp Feature: gene Location: 63513-63749 bp Feature: domain Description: CSP_CDS Location: 63546-63726 bp Feature: domain Description: CSP_CDS Location: 63546-6372 6 bp Feature: gene Location: 63751-64932 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63889-64459 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63889-64459 bp Feature: gene Location: 65719-66358 bp Feature: gene Location: 66534-66896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), CSP_CDS (cd04458), RVT-Retrons

Seq: MPIP01000057.1 Pseudomonas sp. FSL W5-0299 NODE_57_length_21816_cov_3.74237_ID_8270, whole genome shotgun sequence (21816 bp)
Overview 1 RT 1: 93-1545 bp Neighborhood of RT #1 [93, 1545] RVT-GII GIIM DUF2790 Feature: gene Location: 93-710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96-261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96-261 bp Feature: domain Description: GIIM Note: maturase Location: 315-543 bp Feature: domain Description: GIIM Note: maturase Location: 3 15-543 bp Feature: gene Location: 874-1206 bp Feature: domain Description: DUF2790 Location: 916-1192 bp Feature: domain Description: DUF2790 Location: 916-1192 bp Feature: gene Location: 1348-1545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2790 (pfam10976), RVT-GII, GIIM (pfam08388)

Seq: MPIP01000050.1 Pseudomonas sp. FSL W5-0299 NODE_50_length_33423_cov_2.35554_ID_8254, whole genome shotgun sequence (33423 bp)
Overview 1 RT 1: 77-3894 bp Neighborhood of RT #1 [77, 3905] RVT-GII OprD DUF2931 Feature: gene Location: 77-889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434-887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 34 -887 bp Feature: gene Location: 1599-2924 bp Feature: domain Description: OprD Location: 1692-2919 bp Feature: domain Description: OprD Location: 1692-2919 bp Feature: gene Location: 3252-3905 bp Feature: domain Description: DUF2931 Location: 3276-3894 bp Feature: domain Description: DUF2931 Location: 3276-3894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OprD (pfam03573), DUF2931 (pfam11153), RVT-GII