myRT

myRT report for GCA_002005755.1_ASM200575v1

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Seq: MVBW01000061.1 Pseudomonas aeruginosa strain SCH_ABX02 ABX02_contig000061, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 86-1757 bp Neighborhood of RT #1 [86, 1804] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 86-1804 bp Ori: OOH39839.1 Feature: domain Description: RVT_N Location: 143-380 bp Feature: domain Description: RVT_N Location: 1 43-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 -1 082 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 36-1 367 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: domain Description: HNHc Note: nucleases Location: 1 601 -1 757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MVBW01000020.1 Pseudomonas aeruginosa strain SCH_ABX02 ABX02_contig000020, whole genome shotgun sequence (119514 bp)
Overview 1 RT 1: 115473-119514 bp Neighborhood of RT #1 [115473, 119514] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 115473-116465 bp Ori: OOH47128.1 Feature: domain Description: COG4127 Location: 115479-116454 bp Feature: domain Description: COG412 7 Location: 115479-116454 bp Feature: gene Location: 116470-116682 bp Ori: OOH47129.1 Feature: domain Description: AlpA Location: 116473-116644 bp Feature: domain Description: AlpA Location: 116473-116644 bp Feature: gene Location: 116835-119393 bp Ori: OOH47130.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 116850-117345 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 116850-117345 bp Feature: domain Description: nitrilase Location: 118707-119289 bp Feature: domain Description: nitrilase Location: 118707-1192 89 bp Feature: gene Location: 119409-119514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)