myRT

myRT report for GCA_002006125.1_ASM200612v1

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Seq: LZZF01000099.1 Clostridium beijerinckii strain ATCC 39058 CBEIJ_contig000099, whole genome shotgun sequence (17197 bp)
Overview 1 RT 1: 3626-7255 bp Neighborhood of RT #1 [3626, 7255] RVT-GII HNHc Feature: gene Location: 3626-3844 bp Feature: gene Location: 4125-5939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443-51 42 bp Feature: domain Description: HNHc Note: nucleases Location: 5712-5829 bp Feature: domain Description: HNHc Note: nucleases Location: 571 2-5829 bp Feature: gene Location: 6756-6920 bp Feature: gene Location: 7082-7255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: LZZF01000032.1 Clostridium beijerinckii strain ATCC 39058 CBEIJ_contig000032, whole genome shotgun sequence (51851 bp)
Overview 1 RT 1: 25578-31841 bp Neighborhood of RT #1 [25578, 31841] RMtype1_S_TRD-CR_like RMtype1_S_TRD-CR_like HsdM RVT-Retrons Feature: gene Location: 25578-26915 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 25731-26205 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 2 5731-2 62 05 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 26460-26874 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 2 6460-2 6874 bp Feature: gene Location: 26912-28936 bp Feature: domain Description: HsdM Location: 26936-28460 bp Feature: domain Description: HsdM Location: 2 6936-2 8460 bp Feature: gene Location: 29397-30410 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29616-30150 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 9616-30150 bp Feature: gene Location: 30542-30892 bp Feature: gene Location: 30894-31841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_TRD-CR_like (cl38903), HsdM (COG0286), RVT-Retrons