myRT

myRT report for GCA_002006165.1_ASM200616v1

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Seq: LZYZ01000003.1 Clostridium saccharobutylicum strain L1-8 CLOSA_contig000003, whole genome shotgun sequence (556484 bp)
Overview 1 RT 1: 631-4310 bp 2 RT 2: 528705-533545 bp Neighborhood of RT #1 [631, 4330] RVT-GII HNHc MurNAc-LAA Cas_Cas6 Neighborhood of RT #2 [528705, 533545] HTH_XRE RVT-GII PRK06921 Feature: gene Location: 631-2448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 949-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 949-1 651 bp Feature: domain Description: HNHc Note: nucleases Location: 2200-2338 bp Feature: domain Description: HNHc Note: nucleases Location: 2200-2338 bp Feature: gene Location: 2622-3101 bp Feature: domain Description: MurNAc-LAA Location: 2631-2775 bp Feature: domain Description: MurNAc-LAA Location: 2631 -2775 bp Feature: gene Location: 3593-4330 bp Feature: domain Description: Cas_Cas6 Location: 3881-4310 bp Feature: domain Description: Cas_Cas6 Location: 3881 -431 0 bp Feature: gene Location: 528705-528800 bp Feature: gene Location: 529411-529605 bp Feature: domain Description: HTH_XRE Location: 529447-529597 bp Feature: domain Description: HTH_XRE Location: 529447-529597 bp Feature: gene Location: 531093-532616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531117-531813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531 1 1 7-531 81 3 bp Feature: gene Location: 532849-533391 bp Feature: domain Description: PRK06921 Location: 532858-533386 bp Feature: domain Description: PRK06921 Location: 532858-533386 bp Feature: gene Location: 533456-533545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurNAc-LAA (cl02713), Cas_Cas6 (pfam01881), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), PRK06921 (hypothetical protein; Provisional)

Seq: LZYZ01000002.1 Clostridium saccharobutylicum strain L1-8 CLOSA_contig000002, whole genome shotgun sequence (581727 bp)
Overview 1 RT 1: 461491-470348 bp 2 RT 2: 557392-567507 bp Neighborhood of RT #1 [461491, 470386] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Neighborhood of RT #2 [557392, 568007] YcjD RecQ Apolipoprotein Apolipoprotein RVT-Retrons UvrD UvrD Feature: gene Location: 461491-464532 bp Feature: gene Location: 464534-466342 bp Feature: gene Location: 466339-467844 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 466975-467617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 466975-467617 bp Feature: gene Location: 468570-469595 bp Feature: domain Description: DUF1835 Location: 468585-468954 bp Feature: domain Description: DUF1835 Location: 468585-468954 bp Feature: domain Description: DUF3658 Location: 469044-469356 bp Feature: domain Description: DUF3658 Location: 469044-469356 bp Feature: gene Location: 469859-470386 bp Feature: domain Description: Sig70_famx3 Location: 469871-470348 bp Feature: domain Description: Sig70_famx3 Location: 469871-470348 bp Feature: gene Location: 557392-560784 bp Feature: domain Description: YcjD Location: 557791-557959 bp Feature: domain Description: YcjD Location: 557791-557959 bp Feature: domain Description: RecQ Location: 558523-559633 bp Feature: domain Description: RecQ Location: 55852 3-559633 bp Feature: gene Location: 560777-562066 bp Feature: domain Description: Apolipoprotein Location: 560888-561170 bp Feature: domain Description: Apolipoprotein Location: 560888-561170 bp Feature: domain Description: Apolipoprotein Location: 561185-561725 bp Feature: domain Description: Apolipoprotein Location: 561185-56172 5 bp Feature: gene Location: 562689-563813 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 562905-563466 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 562 905-563466 bp Feature: gene Location: 564031-565038 bp Feature: gene Location: 565347-568007 bp Feature: domain Description: UvrD Location: 565962-567087 bp Feature: domain Description: UvrD Location: 565962 -567087 bp Feature: domain Description: UvrD Location: 567273-567507 bp Feature: domain Description: UvrD Location: 5672 73-567507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954), YcjD (COG2852), RecQ (COG0514), Apolipoprotein (pfam01442), UvrD (COG0210)

Seq: LZYZ01000008.1 Clostridium saccharobutylicum strain L1-8 CLOSA_contig000008, whole genome shotgun sequence (357806 bp)
Overview 1 RT 1: 112-3489 bp Neighborhood of RT #1 [112, 3683] RVT-GII HNHc MurNAc-LAA PRK08295 Feature: gene Location: 112-1929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 0-113 2 bp Feature: domain Description: HNHc Note: nucleases Location: 1681-1819 bp Feature: domain Description: HNHc Note: nucleases Location: 1681-1819 bp Feature: gene Location: 2602-2940 bp Feature: domain Description: MurNAc-LAA Location: 2617-2902 bp Feature: domain Description: MurNAc-LAA Location: 2617-2902 bp Feature: gene Location: 3096-3683 bp Feature: domain Description: PRK08295 Location: 3117-3489 bp Feature: domain Description: PRK08295 Location: 3 117-3 489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), MurNAc-LAA (cl02713), PRK08295 (RNA polymerase sporulation sigma factor SigH)